RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 NUTM2AQ8IVF1 878 aaPredicted RBP12.64□□□□□ -0.39
NUP54-209ENST00000510569 ZNF511Q8NB15 262 aa12.64□□□□□ -0.39
NUP54-209ENST00000510569 BAP1Q92560 729 aa12.64□□□□□ -0.39
NUP54-209ENST00000510569 PER1O15534 1290 aaPredicted RBP12.63□□□□□ -0.39
NUP54-209ENST00000510569 CTHP32929 405 aa12.63□□□□□ -0.39
NUP54-209ENST00000510569 DDRGK1Q96HY6 314 aa12.63□□□□□ -0.39
NUP54-209ENST00000510569 MAP10Q9P2G4 905 aa12.63□□□□□ -0.39
NUP54-209ENST00000510569 POTECB2RU33 542 aa12.62□□□□□ -0.39
NUP54-209ENST00000510569 RTL5Q5HYW3 569 aaPredicted RBP12.62□□□□□ -0.39
NUP54-209ENST00000510569 POLR3EQ9NVU0 708 aa12.62□□□□□ -0.39
NUP54-209ENST00000510569 SH3D19Q5HYK7 790 aa12.61□□□□□ -0.39
NUP54-209ENST00000510569 FAM117AQ9C073 453 aa12.61□□□□□ -0.39
NUP54-209ENST00000510569 ALDH1A1P00352 501 aa12.6□□□□□ -0.39
NUP54-209ENST00000510569 HELBQ8NG08 1087 aaPredicted RBP12.6□□□□□ -0.39
NUP54-209ENST00000510569 HPS1Q92902 700 aa12.6□□□□□ -0.39
NUP54-209ENST00000510569 DACH1Q9UI36 760 aa12.6□□□□□ -0.39
NUP54-209ENST00000510569 SKIV2LQ15477 1246 aaKnown RBP12.59□□□□□ -0.39
NUP54-209ENST00000510569 PLEKHG3A1L390 1219 aa12.58□□□□□ -0.4
NUP54-209ENST00000510569 TSC1Q92574 1164 aa12.58□□□□□ -0.4
NUP54-209ENST00000510569 VARSP26640 1264 aaKnown RBP12.57□□□□□ -0.4
NUP54-209ENST00000510569 MPNDQ8N594 471 aa12.57□□□□□ -0.4
NUP54-209ENST00000510569 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.55□□□□□ -0.4
NUP54-209ENST00000510569 TLL2Q9Y6L7 1015 aa12.54□□□□□ -0.4
NUP54-209ENST00000510569 PPP2R2DQ66LE6 453 aa12.53□□□□□ -0.4
NUP54-209ENST00000510569 ZNF775Q96BV0 537 aaPredicted RBP12.53□□□□□ -0.4
NUP54-209ENST00000510569 GMPR2Q9P2T1 348 aaKnown RBP12.53□□□□□ -0.4
NUP54-209ENST00000510569 FOXJ1Q92949 421 aa12.52□□□□□ -0.41
NUP54-209ENST00000510569 ATP13A2Q9NQ11 1180 aa12.52□□□□□ -0.41
NUP54-209ENST00000510569 WASF2Q9Y6W5 498 aa12.52□□□□□ -0.41
NUP54-209ENST00000510569 FBXO31Q5XUX0 539 aaPredicted RBP12.51□□□□□ -0.41
NUP54-209ENST00000510569 PROCA1Q8NCQ7 364 aaPredicted RBP12.51□□□□□ -0.41
NUP54-209ENST00000510569 ARMC2Q8NEN0 867 aa12.51□□□□□ -0.41
NUP54-209ENST00000510569 FAM174AQ8TBP5 190 aa12.5□□□□□ -0.41
NUP54-209ENST00000510569 CTDSPL2Q05D32 466 aa12.48□□□□□ -0.41
NUP54-209ENST00000510569 C4orf48Q5BLP8 95 aa12.48□□□□□ -0.41
NUP54-209ENST00000510569 NBPF14Q5TI25 921 aa12.48□□□□□ -0.41
NUP54-209ENST00000510569 CDK15Q96Q40 435 aa12.48□□□□□ -0.41
NUP54-209ENST00000510569 BPHLQ86WA6 291 aaPredicted RBP12.47□□□□□ -0.41
NUP54-209ENST00000510569 SH3RF1Q7Z6J0 888 aa12.46□□□□□ -0.41
NUP54-209ENST00000510569 C1QTNF2Q9BXJ5 285 aa12.46□□□□□ -0.41
NUP54-209ENST00000510569 C11orf95C9JLR9 678 aaPredicted RBP12.45□□□□□ -0.42
NUP54-209ENST00000510569 ADH1CP00326 375 aa12.45□□□□□ -0.42
NUP54-209ENST00000510569 NNTQ13423 1086 aa12.45□□□□□ -0.42
NUP54-209ENST00000510569 GPKOWQ92917 476 aaPredicted RBP eCLIP12.45□□□□□ -0.42
NUP54-209ENST00000510569 TRIM47Q96LD4 638 aa12.45□□□□□ -0.42
NUP54-209ENST00000510569 GOPCQ9HD26 462 aa12.45□□□□□ -0.42
NUP54-209ENST00000510569 SH3BP5LQ7L8J4 393 aa12.44□□□□□ -0.42
NUP54-209ENST00000510569 SENP2Q9HC62 589 aa12.44□□□□□ -0.42
NUP54-209ENST00000510569 CAPN5O15484 640 aaPredicted RBP12.43□□□□□ -0.42
NUP54-209ENST00000510569 LRRN4Q8WUT4 740 aa12.43□□□□□ -0.42
NUP54-209ENST00000510569 AGERQ15109 404 aa12.42□□□□□ -0.42
NUP54-209ENST00000510569 NEUROD2Q15784 382 aa12.42□□□□□ -0.42
NUP54-209ENST00000510569 TRMT44Q8IYL2 757 aaKnown RBP12.4□□□□□ -0.42
NUP54-209ENST00000510569 KIFC2Q96AC6 838 aa12.4□□□□□ -0.42
NUP54-209ENST00000510569 TRIM46Q7Z4K8 759 aa12.39□□□□□ -0.43
NUP54-209ENST00000510569 KLF16Q9BXK1 252 aaPredicted RBP12.39□□□□□ -0.43
NUP54-209ENST00000510569 MAP4K5Q9Y4K4 846 aa12.39□□□□□ -0.43
NUP54-209ENST00000510569 ZC3H4Q9UPT8 1303 aaKnown RBP12.38□□□□□ -0.43
NUP54-209ENST00000510569 BMP1P13497 986 aa12.38□□□□□ -0.43
NUP54-209ENST00000510569 SNRPBP14678 240 aaKnown RBP12.38□□□□□ -0.43
NUP54-209ENST00000510569 TIMP2P16035 220 aa12.38□□□□□ -0.43
NUP54-209ENST00000510569 BRPF1P55201 1214 aaPredicted RBP12.38□□□□□ -0.43
NUP54-209ENST00000510569 NR5A1Q13285 461 aa12.38□□□□□ -0.43
NUP54-209ENST00000510569 FKBPLQ9UIM3 349 aa12.38□□□□□ -0.43
NUP54-209ENST00000510569 ATP1B4Q9UN42 357 aaPredicted RBP12.38□□□□□ -0.43
NUP54-209ENST00000510569 AP1G2O75843 785 aa12.37□□□□□ -0.43
NUP54-209ENST00000510569 GRM5P41594 1212 aa12.37□□□□□ -0.43
NUP54-209ENST00000510569 RFC5P40937 340 aa12.36□□□□□ -0.43
NUP54-209ENST00000510569 ARID5BQ14865 1188 aa12.36□□□□□ -0.43
NUP54-209ENST00000510569 NR6A1Q15406 480 aa12.36□□□□□ -0.43
NUP54-209ENST00000510569 PDXDC2PQ6P474 469 aa12.36□□□□□ -0.43
NUP54-209ENST00000510569 NR3C2P08235 984 aa12.35□□□□□ -0.43
NUP54-209ENST00000510569 USP17L8P0C7I0 530 aa12.35□□□□□ -0.43
NUP54-209ENST00000510569 WDR4P57081 412 aaKnown RBP12.35□□□□□ -0.43
NUP54-209ENST00000510569 LCE2AQ5TA79 106 aaPredicted RBP12.35□□□□□ -0.43
NUP54-209ENST00000510569 PCMTD1Q96MG8 357 aaPredicted RBP12.35□□□□□ -0.43
NUP54-209ENST00000510569 MAGEB6P1A0A0J9YX57 407 aa12.34□□□□□ -0.43
NUP54-209ENST00000510569 ERFEQ4G0M1 354 aa12.34□□□□□ -0.43
NUP54-209ENST00000510569 TREML4Q6UXN2 200 aa12.34□□□□□ -0.43
NUP54-209ENST00000510569 TPRNQ4KMQ1 711 aa12.32□□□□□ -0.44
NUP54-209ENST00000510569 CARD14Q9BXL6 1004 aa12.32□□□□□ -0.44
NUP54-209ENST00000510569 HMX1Q9NP08 348 aaPredicted RBP12.32□□□□□ -0.44
NUP54-209ENST00000510569 IL27Q8NEV9 243 aa12.31□□□□□ -0.44
NUP54-209ENST00000510569 ARHGAP9Q9BRR9 750 aa12.31□□□□□ -0.44
NUP54-209ENST00000510569 FSHRP23945 695 aa12.3□□□□□ -0.44
NUP54-209ENST00000510569 ITPKCQ96DU7 683 aa12.3□□□□□ -0.44
NUP54-209ENST00000510569 GPSM3Q9Y4H4 160 aa12.3□□□□□ -0.44
NUP54-209ENST00000510569 ZIC2O95409 532 aaPredicted RBP12.29□□□□□ -0.44
NUP54-209ENST00000510569 MRPL14Q6P1L8 145 aaKnown RBP12.29□□□□□ -0.44
NUP54-209ENST00000510569 VASH1Q7L8A9 365 aaPredicted RBP12.29□□□□□ -0.44
NUP54-209ENST00000510569 EPS8L1Q8TE68 723 aa12.29□□□□□ -0.44
NUP54-209ENST00000510569 OCSTAMPQ9BR26 566 aa12.29□□□□□ -0.44
NUP54-209ENST00000510569 ZFAND3Q9H8U3 227 aa12.29□□□□□ -0.44
NUP54-209ENST00000510569 NFX1Q12986 1120 aaKnown RBP12.28□□□□□ -0.44
NUP54-209ENST00000510569 TMEM259Q4ZIN3 620 aa12.28□□□□□ -0.44
NUP54-209ENST00000510569 ZFP42Q96MM3 310 aa12.27□□□□□ -0.45
NUP54-209ENST00000510569 PNMA1Q8ND90 353 aa12.26□□□□□ -0.45
NUP54-209ENST00000510569 CDV3Q9UKY7 258 aaKnown RBP12.26□□□□□ -0.45
NUP54-209ENST00000510569 PTK2Q05397 1052 aa12.25□□□□□ -0.45
NUP54-209ENST00000510569 SLC10A4Q96EP9 437 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms