RNA–Protein interactions for RNA: ENST00000485921.5

ABCF3-216, Transcript of ATP binding cassette subfamily F member 3, human

TSL 2

Gene ABCF3, Length 813 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF3-216	ENST00000485921		A0A1W2PP64	1363 aa		32.8	■■■□□ 2.84
ABCF3-216	ENST00000485921	ARHGEF10	O15013	1369 aa		32.8	■■■□□ 2.84
ABCF3-216	ENST00000485921	KIF7	Q2M1P5	1343 aa		32.79	■■■□□ 2.84
ABCF3-216	ENST00000485921	SPATA31A6	Q5VVP1	1343 aa		32.79	■■■□□ 2.84
ABCF3-216	ENST00000485921	SSH2	Q76I76	1423 aa		32.78	■■■□□ 2.84
ABCF3-216	ENST00000485921	ANKRD36B	Q8N2N9	1353 aa		32.77	■■■□□ 2.84
ABCF3-216	ENST00000485921	TTC21B	Q7Z4L5	1316 aa		32.76	■■■□□ 2.83
ABCF3-216	ENST00000485921	MYOM1	P52179	1685 aa		32.75	■■■□□ 2.83
ABCF3-216	ENST00000485921	ALS2	Q96Q42	1657 aa		32.75	■■■□□ 2.83
ABCF3-216	ENST00000485921	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.75	■■■□□ 2.83
ABCF3-216	ENST00000485921	NUTM2E	B1AL46	878 aa	Predicted RBP	32.75	■■■□□ 2.83
ABCF3-216	ENST00000485921	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.75	■■■□□ 2.83
ABCF3-216	ENST00000485921	ABTB2	Q8N961	1025 aa		32.75	■■■□□ 2.83
ABCF3-216	ENST00000485921	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.74	■■■□□ 2.83
ABCF3-216	ENST00000485921	MON2	Q7Z3U7	1717 aa		32.74	■■■□□ 2.83
ABCF3-216	ENST00000485921	PLEKHG5	O94827	1062 aa		32.73	■■■□□ 2.83
ABCF3-216	ENST00000485921	NUTM2G	Q5VZR2	741 aa		32.72	■■■□□ 2.83
ABCF3-216	ENST00000485921	TTC21A	Q8NDW8	1320 aa		32.72	■■■□□ 2.83
ABCF3-216	ENST00000485921	CCDC7	Q96M83	1385 aa		32.71	■■■□□ 2.83
ABCF3-216	ENST00000485921	EDC4	Q6P2E9	1401 aa	Known RBP	32.71	■■■□□ 2.83
ABCF3-216	ENST00000485921	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.71	■■■□□ 2.83
ABCF3-216	ENST00000485921	CABLES1	Q8TDN4	633 aa		32.7	■■■□□ 2.83
ABCF3-216	ENST00000485921	WASHC2A	Q641Q2	1341 aa		32.7	■■■□□ 2.82
ABCF3-216	ENST00000485921	NRK	Q7Z2Y5	1582 aa		32.7	■■■□□ 2.82
ABCF3-216	ENST00000485921	LRP6	O75581	1613 aa		32.66	■■■□□ 2.82
ABCF3-216	ENST00000485921	NLRP6	P59044	892 aa		32.66	■■■□□ 2.82
ABCF3-216	ENST00000485921	NLRP13	Q86W25	1043 aa		32.66	■■■□□ 2.82
ABCF3-216	ENST00000485921	HAP1	P54257	671 aa	Predicted RBP	32.65	■■■□□ 2.82
ABCF3-216	ENST00000485921	CARD14	Q9BXL6	1004 aa		32.65	■■■□□ 2.82
ABCF3-216	ENST00000485921	PANK3	Q9H999	370 aa		32.65	■■■□□ 2.82
ABCF3-216	ENST00000485921	MED1	Q15648	1581 aa	Predicted RBP	32.63	■■■□□ 2.81
ABCF3-216	ENST00000485921	ADAMTS2	O95450	1211 aa		32.63	■■■□□ 2.81
ABCF3-216	ENST00000485921	MEX3C	Q5U5Q3	659 aa	Known RBP	32.63	■■■□□ 2.81
ABCF3-216	ENST00000485921	NME9	Q86XW9	330 aa		32.63	■■■□□ 2.81
ABCF3-216	ENST00000485921	PIK3C2A	O00443	1686 aa		32.62	■■■□□ 2.81
ABCF3-216	ENST00000485921	USP19	O94966	1318 aa		32.59	■■■□□ 2.81
ABCF3-216	ENST00000485921	ZRANB1	Q9UGI0	708 aa		32.59	■■■□□ 2.81
ABCF3-216	ENST00000485921	NSD3	Q9BZ95	1437 aa		32.59	■■■□□ 2.81
ABCF3-216	ENST00000485921	USP31	Q70CQ4	1352 aa		32.57	■■■□□ 2.8
ABCF3-216	ENST00000485921	ABCA3	Q99758	1704 aa		32.56	■■■□□ 2.8
ABCF3-216	ENST00000485921	CRYBG1	Q9Y4K1	1723 aa		32.55	■■■□□ 2.8
ABCF3-216	ENST00000485921	FYB1	O15117	783 aa		32.53	■■■□□ 2.8
ABCF3-216	ENST00000485921	GC	P02774	474 aa		32.53	■■■□□ 2.8
ABCF3-216	ENST00000485921	C8orf37	Q96NL8	207 aa		32.53	■■■□□ 2.8
ABCF3-216	ENST00000485921	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.51	■■■□□ 2.8
ABCF3-216	ENST00000485921	COG3	Q96JB2	828 aa		32.5	■■■□□ 2.79
ABCF3-216	ENST00000485921	GGNBP2	Q9H3C7	697 aa		32.5	■■■□□ 2.79
ABCF3-216	ENST00000485921	SLIT3	O75094	1523 aa		32.5	■■■□□ 2.79
ABCF3-216	ENST00000485921	CGNL1	Q0VF96	1302 aa		32.5	■■■□□ 2.79
ABCF3-216	ENST00000485921	ZC3H6	P61129	1189 aa	Known RBP	32.49	■■■□□ 2.79
ABCF3-216	ENST00000485921	NGLY1	Q96IV0	654 aa		32.49	■■■□□ 2.79
ABCF3-216	ENST00000485921	MARF1	Q9Y4F3	1742 aa	Known RBP	32.48	■■■□□ 2.79
ABCF3-216	ENST00000485921	KCNH5	Q8NCM2	988 aa		32.48	■■■□□ 2.79
ABCF3-216	ENST00000485921	PHF23	Q9BUL5	403 aa	Predicted RBP	32.48	■■■□□ 2.79
ABCF3-216	ENST00000485921	OVOS2	A0A0J9YW53	1432 aa		32.48	■■■□□ 2.79
ABCF3-216	ENST00000485921	OVOS2	Q6IE36	1432 aa		32.48	■■■□□ 2.79
ABCF3-216	ENST00000485921	SOX12	O15370	315 aa		32.47	■■■□□ 2.79
ABCF3-216	ENST00000485921	KNSTRN	Q9Y448	316 aa		32.47	■■■□□ 2.79
ABCF3-216	ENST00000485921	USP54	Q70EL1	1684 aa		32.46	■■■□□ 2.79
ABCF3-216	ENST00000485921	FAM83G	A6ND36	823 aa		32.45	■■■□□ 2.79
ABCF3-216	ENST00000485921	KIAA0232	Q92628	1395 aa		32.45	■■■□□ 2.78
ABCF3-216	ENST00000485921	PRDM11	Q9NQV5	511 aa		32.44	■■■□□ 2.78
ABCF3-216	ENST00000485921	KIF20B	Q96Q89	1820 aa		32.44	■■■□□ 2.78
ABCF3-216	ENST00000485921	AFF2	P51816	1311 aa		32.43	■■■□□ 2.78
ABCF3-216	ENST00000485921	PER1	O15534	1290 aa	Predicted RBP	32.42	■■■□□ 2.78
ABCF3-216	ENST00000485921	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.41	■■■□□ 2.78
ABCF3-216	ENST00000485921	CPD	O75976	1380 aa		32.41	■■■□□ 2.78
ABCF3-216	ENST00000485921	ZBTB7C	A1YPR0	619 aa		32.39	■■■□□ 2.78
ABCF3-216	ENST00000485921	CHRNA2	Q15822	529 aa		32.39	■■■□□ 2.78
ABCF3-216	ENST00000485921	RGS17	Q9UGC6	210 aa	Predicted RBP	32.39	■■■□□ 2.78
ABCF3-216	ENST00000485921	NFAT5	O94916	1531 aa		32.38	■■■□□ 2.77
ABCF3-216	ENST00000485921	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.38	■■■□□ 2.77
ABCF3-216	ENST00000485921	ARHGEF25	Q86VW2	580 aa		32.37	■■■□□ 2.77
ABCF3-216	ENST00000485921	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.36	■■■□□ 2.77
ABCF3-216	ENST00000485921	USP21	Q9UK80	565 aa		32.36	■■■□□ 2.77
ABCF3-216	ENST00000485921	COL14A1	Q05707	1796 aa	Known RBP	32.35	■■■□□ 2.77
ABCF3-216	ENST00000485921	NSD2	O96028	1365 aa		32.35	■■■□□ 2.77
ABCF3-216	ENST00000485921	ZNF772	Q68DY9	489 aa	Predicted RBP	32.35	■■■□□ 2.77
ABCF3-216	ENST00000485921	SLIT2	O94813	1529 aa		32.35	■■■□□ 2.77
ABCF3-216	ENST00000485921	BTG4	Q9NY30	223 aa		32.34	■■■□□ 2.77
ABCF3-216	ENST00000485921	DDX10	Q13206	875 aa	Known RBP	32.33	■■■□□ 2.77
ABCF3-216	ENST00000485921	FBLN1	P23142	703 aa		32.32	■■■□□ 2.76
ABCF3-216	ENST00000485921	BCL9L	Q86UU0	1499 aa		32.31	■■■□□ 2.76
ABCF3-216	ENST00000485921	UNC5CL	Q8IV45	518 aa		32.31	■■■□□ 2.76
ABCF3-216	ENST00000485921	PLCH1	Q4KWH8	1693 aa		32.31	■■■□□ 2.76
ABCF3-216	ENST00000485921	AATK	Q6ZMQ8	1374 aa		32.3	■■■□□ 2.76
ABCF3-216	ENST00000485921	MORC1	Q86VD1	984 aa		32.28	■■■□□ 2.76
ABCF3-216	ENST00000485921	ANKRD26	Q9UPS8	1709 aa		32.27	■■■□□ 2.76
ABCF3-216	ENST00000485921	CC2D1B	Q5T0F9	858 aa	Known RBP	32.27	■■■□□ 2.76
ABCF3-216	ENST00000485921	NWD2	Q9ULI1	1742 aa		32.26	■■■□□ 2.76
ABCF3-216	ENST00000485921	POTEA	Q6S8J7	498 aa		32.26	■■■□□ 2.75
ABCF3-216	ENST00000485921	QTRT2	Q9H974	415 aa	Known RBP	32.26	■■■□□ 2.75
ABCF3-216	ENST00000485921	MAP3K19	Q56UN5	1328 aa		32.26	■■■□□ 2.75
ABCF3-216	ENST00000485921	CAMTA1	Q9Y6Y1	1673 aa		32.25	■■■□□ 2.75
ABCF3-216	ENST00000485921	NPC1L1	Q9UHC9	1359 aa		32.25	■■■□□ 2.75
ABCF3-216	ENST00000485921	TNNT2	P45379	298 aa	Predicted RBP	32.25	■■■□□ 2.75
ABCF3-216	ENST00000485921	RRS1	Q15050	365 aa	Known RBP	32.25	■■■□□ 2.75
ABCF3-216	ENST00000485921	LMO7	Q8WWI1	1683 aa		32.24	■■■□□ 2.75
ABCF3-216	ENST00000485921	TRPC5	Q9UL62	973 aa	Predicted RBP	32.24	■■■□□ 2.75
ABCF3-216	ENST00000485921	AXIN2	Q9Y2T1	843 aa		32.24	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 52 ms