RNA–Protein interactions for RNA: ENST00000478573.6

CDC42BPA-212, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-212ENST00000478573 LIMD1Q9UGP4 676 aa9.48□□□□□ -0.89
CDC42BPA-212ENST00000478573 LYPD8Q6UX82 237 aa9.47□□□□□ -0.89
CDC42BPA-212ENST00000478573 ZNF511Q8NB15 262 aa9.47□□□□□ -0.89
CDC42BPA-212ENST00000478573 SIAH2O43255 324 aa9.46□□□□□ -0.9
CDC42BPA-212ENST00000478573 PRPF38BQ5VTL8 546 aaKnown RBP9.46□□□□□ -0.9
CDC42BPA-212ENST00000478573 MAP10Q9P2G4 905 aa9.46□□□□□ -0.9
CDC42BPA-212ENST00000478573 TLL2Q9Y6L7 1015 aa9.46□□□□□ -0.9
CDC42BPA-212ENST00000478573 QPCTQ16769 361 aa9.45□□□□□ -0.9
CDC42BPA-212ENST00000478573 PER1O15534 1290 aaPredicted RBP9.42□□□□□ -0.9
CDC42BPA-212ENST00000478573 VARSP26640 1264 aaKnown RBP9.42□□□□□ -0.9
CDC42BPA-212ENST00000478573 CLK2P49760 499 aaKnown RBP9.42□□□□□ -0.9
CDC42BPA-212ENST00000478573 SENP2Q9HC62 589 aa9.42□□□□□ -0.9
CDC42BPA-212ENST00000478573 POLR3EQ9NVU0 708 aa9.42□□□□□ -0.9
CDC42BPA-212ENST00000478573 F12P00748 615 aaPredicted RBP9.41□□□□□ -0.9
CDC42BPA-212ENST00000478573 SNRPBP14678 240 aaKnown RBP9.41□□□□□ -0.9
CDC42BPA-212ENST00000478573 AGERQ15109 404 aa9.41□□□□□ -0.9
CDC42BPA-212ENST00000478573 ATP1B4Q9UN42 357 aaPredicted RBP9.41□□□□□ -0.9
CDC42BPA-212ENST00000478573 CAPN5O15484 640 aaPredicted RBP9.4□□□□□ -0.9
CDC42BPA-212ENST00000478573 LILRB3O75022 631 aa9.4□□□□□ -0.9
CDC42BPA-212ENST00000478573 BMP1P13497 986 aa9.4□□□□□ -0.9
CDC42BPA-212ENST00000478573 HELBQ8NG08 1087 aaPredicted RBP9.4□□□□□ -0.9
CDC42BPA-212ENST00000478573 FOXJ1Q92949 421 aa9.4□□□□□ -0.9
CDC42BPA-212ENST00000478573 PLEKHG3A1L390 1219 aa9.39□□□□□ -0.91
CDC42BPA-212ENST00000478573 ARID5BQ14865 1188 aa9.39□□□□□ -0.91
CDC42BPA-212ENST00000478573 TREML4Q6UXN2 200 aa9.39□□□□□ -0.91
CDC42BPA-212ENST00000478573 FAM174AQ8TBP5 190 aa9.39□□□□□ -0.91
CDC42BPA-212ENST00000478573 BCANQ96GW7 911 aa9.39□□□□□ -0.91
CDC42BPA-212ENST00000478573 TRIM47Q96LD4 638 aa9.39□□□□□ -0.91
CDC42BPA-212ENST00000478573 RSPH6AQ9H0K4 717 aa9.39□□□□□ -0.91
CDC42BPA-212ENST00000478573 RTL5Q5HYW3 569 aaPredicted RBP9.38□□□□□ -0.91
CDC42BPA-212ENST00000478573 KIFC2Q96AC6 838 aa9.38□□□□□ -0.91
CDC42BPA-212ENST00000478573 NNTQ13423 1086 aa9.37□□□□□ -0.91
CDC42BPA-212ENST00000478573 TUSC1Q2TAM9 212 aa9.37□□□□□ -0.91
CDC42BPA-212ENST00000478573 GPBP1L1Q9HC44 474 aaPredicted RBP9.37□□□□□ -0.91
CDC42BPA-212ENST00000478573 WFS1O76024 890 aa9.36□□□□□ -0.91
CDC42BPA-212ENST00000478573 KDM4CQ9H3R0 1056 aa9.35□□□□□ -0.91
CDC42BPA-212ENST00000478573 TRIM46Q7Z4K8 759 aa9.34□□□□□ -0.91
CDC42BPA-212ENST00000478573 WDR4P57081 412 aaKnown RBP9.33□□□□□ -0.92
CDC42BPA-212ENST00000478573 BPHLQ86WA6 291 aaPredicted RBP9.33□□□□□ -0.92
CDC42BPA-212ENST00000478573 ARMC2Q8NEN0 867 aa9.33□□□□□ -0.92
CDC42BPA-212ENST00000478573 ADH1CP00326 375 aa9.32□□□□□ -0.92
CDC42BPA-212ENST00000478573 C4orf48Q5BLP8 95 aa9.32□□□□□ -0.92
CDC42BPA-212ENST00000478573 MPNDQ8N594 471 aa9.32□□□□□ -0.92
CDC42BPA-212ENST00000478573 MAGEB6P1A0A0J9YX57 407 aa9.31□□□□□ -0.92
CDC42BPA-212ENST00000478573 NFX1Q12986 1120 aaKnown RBP9.31□□□□□ -0.92
CDC42BPA-212ENST00000478573 NBPF14Q5TI25 921 aa9.31□□□□□ -0.92
CDC42BPA-212ENST00000478573 FAM117AQ9C073 453 aa9.31□□□□□ -0.92
CDC42BPA-212ENST00000478573 TIMP2P16035 220 aa9.3□□□□□ -0.92
CDC42BPA-212ENST00000478573 CTDSPL2Q05D32 466 aa9.3□□□□□ -0.92
CDC42BPA-212ENST00000478573 CARD14Q9BXL6 1004 aa9.3□□□□□ -0.92
CDC42BPA-212ENST00000478573 TERTO14746 1132 aaKnown RBP9.29□□□□□ -0.92
CDC42BPA-212ENST00000478573 LCE2AQ5TA79 106 aaPredicted RBP9.29□□□□□ -0.92
CDC42BPA-212ENST00000478573 DDRGK1Q96HY6 314 aa9.29□□□□□ -0.92
CDC42BPA-212ENST00000478573 ZFP42Q96MM3 310 aa9.29□□□□□ -0.92
CDC42BPA-212ENST00000478573 CDK15Q96Q40 435 aa9.29□□□□□ -0.92
CDC42BPA-212ENST00000478573 SCARF1Q14162 830 aa9.28□□□□□ -0.92
CDC42BPA-212ENST00000478573 SKIV2LQ15477 1246 aaKnown RBP9.28□□□□□ -0.92
CDC42BPA-212ENST00000478573 SH3D19Q5HYK7 790 aa9.28□□□□□ -0.92
CDC42BPA-212ENST00000478573 PROCA1Q8NCQ7 364 aaPredicted RBP9.28□□□□□ -0.92
CDC42BPA-212ENST00000478573 ZIC2O95409 532 aaPredicted RBP9.27□□□□□ -0.93
CDC42BPA-212ENST00000478573 MRPL14Q6P1L8 145 aaKnown RBP9.27□□□□□ -0.93
CDC42BPA-212ENST00000478573 LRRN4Q8WUT4 740 aa9.27□□□□□ -0.93
CDC42BPA-212ENST00000478573 PURBQ96QR8 312 aaKnown RBP9.27□□□□□ -0.93
CDC42BPA-212ENST00000478573 ZFAND3Q9H8U3 227 aa9.27□□□□□ -0.93
CDC42BPA-212ENST00000478573 NR3C2P08235 984 aa9.26□□□□□ -0.93
CDC42BPA-212ENST00000478573 FSHRP23945 695 aa9.26□□□□□ -0.93
CDC42BPA-212ENST00000478573 NR5A1Q13285 461 aa9.26□□□□□ -0.93
CDC42BPA-212ENST00000478573 VASH1Q7L8A9 365 aaPredicted RBP9.26□□□□□ -0.93
CDC42BPA-212ENST00000478573 ITPKCQ96DU7 683 aa9.26□□□□□ -0.93
CDC42BPA-212ENST00000478573 FBXO31Q5XUX0 539 aaPredicted RBP9.25□□□□□ -0.93
CDC42BPA-212ENST00000478573 SH3BP5LQ7L8J4 393 aa9.25□□□□□ -0.93
CDC42BPA-212ENST00000478573 SH3RF1Q7Z6J0 888 aa9.25□□□□□ -0.93
CDC42BPA-212ENST00000478573 AP1G2O75843 785 aa9.24□□□□□ -0.93
CDC42BPA-212ENST00000478573 GRM5P41594 1212 aa9.24□□□□□ -0.93
CDC42BPA-212ENST00000478573 C6orf118Q5T5N4 469 aa9.24□□□□□ -0.93
CDC42BPA-212ENST00000478573 C1QTNF2Q9BXJ5 285 aa9.24□□□□□ -0.93
CDC42BPA-212ENST00000478573 VEGFBP49765 207 aa9.23□□□□□ -0.93
CDC42BPA-212ENST00000478573 NR6A1Q15406 480 aa9.23□□□□□ -0.93
CDC42BPA-212ENST00000478573 SLC16A10Q8TF71 515 aa9.23□□□□□ -0.93
CDC42BPA-212ENST00000478573 KLF16Q9BXK1 252 aaPredicted RBP9.23□□□□□ -0.93
CDC42BPA-212ENST00000478573 NXF1Q9UBU9 619 aaKnown RBP9.23□□□□□ -0.93
CDC42BPA-212ENST00000478573 SOBPA7XYQ1 873 aa9.22□□□□□ -0.93
CDC42BPA-212ENST00000478573 GPKOWQ92917 476 aaPredicted RBP eCLIP9.22□□□□□ -0.93
CDC42BPA-212ENST00000478573 ARHGAP9Q9BRR9 750 aa9.22□□□□□ -0.93
CDC42BPA-212ENST00000478573 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.22□□□□□ -0.93
CDC42BPA-212ENST00000478573 ERFEQ4G0M1 354 aa9.21□□□□□ -0.94
CDC42BPA-212ENST00000478573 LCE2CQ5TA81 110 aa9.21□□□□□ -0.94
CDC42BPA-212ENST00000478573 FKBPLQ9UIM3 349 aa9.21□□□□□ -0.94
CDC42BPA-212ENST00000478573 UPP2O95045 317 aa9.2□□□□□ -0.94
CDC42BPA-212ENST00000478573 BMP2P12643 396 aa9.2□□□□□ -0.94
CDC42BPA-212ENST00000478573 ZBTB33Q86T24 672 aa9.2□□□□□ -0.94
CDC42BPA-212ENST00000478573 MAP4K5Q9Y4K4 846 aa9.2□□□□□ -0.94
CDC42BPA-212ENST00000478573 PPP2R2DQ66LE6 453 aa9.19□□□□□ -0.94
CDC42BPA-212ENST00000478573 PDXDC2PQ6P474 469 aa9.19□□□□□ -0.94
CDC42BPA-212ENST00000478573 TRMT44Q8IYL2 757 aaKnown RBP9.19□□□□□ -0.94
CDC42BPA-212ENST00000478573 SLC10A4Q96EP9 437 aa9.19□□□□□ -0.94
CDC42BPA-212ENST00000478573 CCDC116Q8IYX3 515 aa9.18□□□□□ -0.94
CDC42BPA-212ENST00000478573 WIPF1O43516 503 aa9.17□□□□□ -0.94
CDC42BPA-212ENST00000478573 MAN1A2O60476 641 aa9.17□□□□□ -0.94
CDC42BPA-212ENST00000478573 USP17L8P0C7I0 530 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms