RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 MAP10Q9P2G4 905 aa10.1□□□□□ -0.79
UBR3-209ENST00000477461 GMPR2Q9P2T1 348 aaKnown RBP10.1□□□□□ -0.79
UBR3-209ENST00000477461 SIAH2O43255 324 aa10.09□□□□□ -0.79
UBR3-209ENST00000477461 RTL5Q5HYW3 569 aaPredicted RBP10.09□□□□□ -0.79
UBR3-209ENST00000477461 PRPF38BQ5VTL8 546 aaKnown RBP10.09□□□□□ -0.79
UBR3-209ENST00000477461 ATP1B4Q9UN42 357 aaPredicted RBP10.09□□□□□ -0.79
UBR3-209ENST00000477461 CTC1Q2NKJ3 1217 aa10.08□□□□□ -0.8
UBR3-209ENST00000477461 CRIPAKQ8N1N5 446 aa10.08□□□□□ -0.8
UBR3-209ENST00000477461 LILRB3O75022 631 aa10.07□□□□□ -0.8
UBR3-209ENST00000477461 ZNF511Q8NB15 262 aa10.07□□□□□ -0.8
UBR3-209ENST00000477461 CLK2P49760 499 aaKnown RBP10.06□□□□□ -0.8
UBR3-209ENST00000477461 SMCPP49901 116 aaPredicted RBP10.06□□□□□ -0.8
UBR3-209ENST00000477461 KDM4CQ9H3R0 1056 aa10.06□□□□□ -0.8
UBR3-209ENST00000477461 WASF2Q9Y6W5 498 aa10.06□□□□□ -0.8
UBR3-209ENST00000477461 C11orf95C9JLR9 678 aaPredicted RBP10.05□□□□□ -0.8
UBR3-209ENST00000477461 FAM117AQ9C073 453 aa10.05□□□□□ -0.8
UBR3-209ENST00000477461 RSPH6AQ9H0K4 717 aa10.05□□□□□ -0.8
UBR3-209ENST00000477461 FOXJ1Q92949 421 aa10.04□□□□□ -0.8
UBR3-209ENST00000477461 TLL2Q9Y6L7 1015 aa10.04□□□□□ -0.8
UBR3-209ENST00000477461 ATP13A2Q9NQ11 1180 aa10.03□□□□□ -0.8
UBR3-209ENST00000477461 F12P00748 615 aaPredicted RBP10.02□□□□□ -0.81
UBR3-209ENST00000477461 PROCA1Q8NCQ7 364 aaPredicted RBP10.02□□□□□ -0.81
UBR3-209ENST00000477461 ARID5BQ14865 1188 aa10.01□□□□□ -0.81
UBR3-209ENST00000477461 AGERQ15109 404 aa10.01□□□□□ -0.81
UBR3-209ENST00000477461 TUSC1Q2TAM9 212 aa10.01□□□□□ -0.81
UBR3-209ENST00000477461 VARSP26640 1264 aaKnown RBP10□□□□□ -0.81
UBR3-209ENST00000477461 CTDSPL2Q05D32 466 aa10□□□□□ -0.81
UBR3-209ENST00000477461 FBXO31Q5XUX0 539 aaPredicted RBP10□□□□□ -0.81
UBR3-209ENST00000477461 SNRPBP14678 240 aaKnown RBP9.99□□□□□ -0.81
UBR3-209ENST00000477461 HELBQ8NG08 1087 aaPredicted RBP9.99□□□□□ -0.81
UBR3-209ENST00000477461 SKIV2LQ15477 1246 aaKnown RBP9.98□□□□□ -0.81
UBR3-209ENST00000477461 PLEKHG3A1L390 1219 aa9.97□□□□□ -0.81
UBR3-209ENST00000477461 CAPN5O15484 640 aaPredicted RBP9.97□□□□□ -0.81
UBR3-209ENST00000477461 BMP1P13497 986 aa9.96□□□□□ -0.82
UBR3-209ENST00000477461 C4orf48Q5BLP8 95 aa9.96□□□□□ -0.82
UBR3-209ENST00000477461 FAM174AQ8TBP5 190 aa9.96□□□□□ -0.82
UBR3-209ENST00000477461 DDRGK1Q96HY6 314 aa9.96□□□□□ -0.82
UBR3-209ENST00000477461 NNTQ13423 1086 aa9.95□□□□□ -0.82
UBR3-209ENST00000477461 LRRN4Q8WUT4 740 aa9.95□□□□□ -0.82
UBR3-209ENST00000477461 SH3D19Q5HYK7 790 aa9.93□□□□□ -0.82
UBR3-209ENST00000477461 MAGEB6P1A0A0J9YX57 407 aa9.92□□□□□ -0.82
UBR3-209ENST00000477461 TRIM46Q7Z4K8 759 aa9.92□□□□□ -0.82
UBR3-209ENST00000477461 BPHLQ86WA6 291 aaPredicted RBP9.92□□□□□ -0.82
UBR3-209ENST00000477461 SENP2Q9HC62 589 aa9.92□□□□□ -0.82
UBR3-209ENST00000477461 AP1G2O75843 785 aa9.91□□□□□ -0.82
UBR3-209ENST00000477461 WDR4P57081 412 aaKnown RBP9.91□□□□□ -0.82
UBR3-209ENST00000477461 ARMC2Q8NEN0 867 aa9.91□□□□□ -0.82
UBR3-209ENST00000477461 TRIM47Q96LD4 638 aa9.91□□□□□ -0.82
UBR3-209ENST00000477461 CARD14Q9BXL6 1004 aa9.91□□□□□ -0.82
UBR3-209ENST00000477461 NEUROD2Q15784 382 aa9.9□□□□□ -0.82
UBR3-209ENST00000477461 TREML4Q6UXN2 200 aa9.9□□□□□ -0.82
UBR3-209ENST00000477461 IL27Q8NEV9 243 aa9.9□□□□□ -0.82
UBR3-209ENST00000477461 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.9□□□□□ -0.82
UBR3-209ENST00000477461 ADH1CP00326 375 aa9.89□□□□□ -0.83
UBR3-209ENST00000477461 NR6A1Q15406 480 aa9.89□□□□□ -0.83
UBR3-209ENST00000477461 MPNDQ8N594 471 aa9.89□□□□□ -0.83
UBR3-209ENST00000477461 CDK15Q96Q40 435 aa9.89□□□□□ -0.83
UBR3-209ENST00000477461 GRM5P41594 1212 aa9.88□□□□□ -0.83
UBR3-209ENST00000477461 NR3C2P08235 984 aa9.87□□□□□ -0.83
UBR3-209ENST00000477461 TIMP2P16035 220 aa9.87□□□□□ -0.83
UBR3-209ENST00000477461 NBPF14Q5TI25 921 aa9.87□□□□□ -0.83
UBR3-209ENST00000477461 ZFAND3Q9H8U3 227 aa9.87□□□□□ -0.83
UBR3-209ENST00000477461 WFS1O76024 890 aa9.86□□□□□ -0.83
UBR3-209ENST00000477461 PPP2R2DQ66LE6 453 aa9.86□□□□□ -0.83
UBR3-209ENST00000477461 SH3BP5LQ7L8J4 393 aa9.86□□□□□ -0.83
UBR3-209ENST00000477461 KIFC2Q96AC6 838 aa9.86□□□□□ -0.83
UBR3-209ENST00000477461 ZFP42Q96MM3 310 aa9.86□□□□□ -0.83
UBR3-209ENST00000477461 ZIC2O95409 532 aaPredicted RBP9.85□□□□□ -0.83
UBR3-209ENST00000477461 VASH1Q7L8A9 365 aaPredicted RBP9.85□□□□□ -0.83
UBR3-209ENST00000477461 SH3RF1Q7Z6J0 888 aa9.85□□□□□ -0.83
UBR3-209ENST00000477461 EPS8L1Q8TE68 723 aa9.85□□□□□ -0.83
UBR3-209ENST00000477461 ITPKCQ96DU7 683 aa9.85□□□□□ -0.83
UBR3-209ENST00000477461 KLF16Q9BXK1 252 aaPredicted RBP9.85□□□□□ -0.83
UBR3-209ENST00000477461 NR5A1Q13285 461 aa9.84□□□□□ -0.83
UBR3-209ENST00000477461 PURBQ96QR8 312 aaKnown RBP9.84□□□□□ -0.83
UBR3-209ENST00000477461 LCE2AQ5TA79 106 aaPredicted RBP9.83□□□□□ -0.84
UBR3-209ENST00000477461 MRPL14Q6P1L8 145 aaKnown RBP9.83□□□□□ -0.84
UBR3-209ENST00000477461 C1QTNF2Q9BXJ5 285 aa9.83□□□□□ -0.84
UBR3-209ENST00000477461 FKBPLQ9UIM3 349 aa9.83□□□□□ -0.84
UBR3-209ENST00000477461 FSHRP23945 695 aa9.82□□□□□ -0.84
UBR3-209ENST00000477461 NFX1Q12986 1120 aaKnown RBP9.82□□□□□ -0.84
UBR3-209ENST00000477461 ARHGAP9Q9BRR9 750 aa9.82□□□□□ -0.84
UBR3-209ENST00000477461 HMX1Q9NP08 348 aaPredicted RBP9.82□□□□□ -0.84
UBR3-209ENST00000477461 SOBPA7XYQ1 873 aa9.81□□□□□ -0.84
UBR3-209ENST00000477461 TERTO14746 1132 aaKnown RBP9.81□□□□□ -0.84
UBR3-209ENST00000477461 RFC5P40937 340 aa9.81□□□□□ -0.84
UBR3-209ENST00000477461 SCARF1Q14162 830 aa9.81□□□□□ -0.84
UBR3-209ENST00000477461 ERFEQ4G0M1 354 aa9.81□□□□□ -0.84
UBR3-209ENST00000477461 C6orf118Q5T5N4 469 aa9.81□□□□□ -0.84
UBR3-209ENST00000477461 PCMTD1Q96MG8 357 aaPredicted RBP9.81□□□□□ -0.84
UBR3-209ENST00000477461 USP17L8P0C7I0 530 aa9.8□□□□□ -0.84
UBR3-209ENST00000477461 VEGFBP49765 207 aa9.8□□□□□ -0.84
UBR3-209ENST00000477461 TPRNQ4KMQ1 711 aa9.8□□□□□ -0.84
UBR3-209ENST00000477461 PDXDC2PQ6P474 469 aa9.8□□□□□ -0.84
UBR3-209ENST00000477461 ZBTB33Q86T24 672 aa9.8□□□□□ -0.84
UBR3-209ENST00000477461 GPKOWQ92917 476 aaPredicted RBP eCLIP9.79□□□□□ -0.84
UBR3-209ENST00000477461 BRPF1P55201 1214 aaPredicted RBP9.78□□□□□ -0.84
UBR3-209ENST00000477461 TRMT44Q8IYL2 757 aaKnown RBP9.78□□□□□ -0.84
UBR3-209ENST00000477461 LCE2CQ5TA81 110 aa9.76□□□□□ -0.85
UBR3-209ENST00000477461 CCDC116Q8IYX3 515 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms