RNA–Protein interactions for RNA: ENST00000471987.1

CD46-213, Transcript of CD46 molecule, humanhuman

TSL 3

Gene CD46, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-213ENST00000471987 TSC1Q92574 1164 aa11.62□□□□□ -0.55
CD46-213ENST00000471987 DDRGK1Q96HY6 314 aa11.62□□□□□ -0.55
CD46-213ENST00000471987 POLR3EQ9NVU0 708 aa11.62□□□□□ -0.55
CD46-213ENST00000471987 LINC01559Q495D7 138 aa11.61□□□□□ -0.55
CD46-213ENST00000471987 ZNF511Q8NB15 262 aa11.6□□□□□ -0.55
CD46-213ENST00000471987 HELBQ8NG08 1087 aaPredicted RBP11.6□□□□□ -0.55
CD46-213ENST00000471987 SIAH2O43255 324 aa11.59□□□□□ -0.55
CD46-213ENST00000471987 ALDH1A1P00352 501 aa11.59□□□□□ -0.55
CD46-213ENST00000471987 F12P00748 615 aaPredicted RBP11.59□□□□□ -0.55
CD46-213ENST00000471987 PER1O15534 1290 aaPredicted RBP11.58□□□□□ -0.56
CD46-213ENST00000471987 FAM117AQ9C073 453 aa11.58□□□□□ -0.56
CD46-213ENST00000471987 MAP10Q9P2G4 905 aa11.58□□□□□ -0.56
CD46-213ENST00000471987 SKIV2LQ15477 1246 aaKnown RBP11.57□□□□□ -0.56
CD46-213ENST00000471987 RTL5Q5HYW3 569 aaPredicted RBP11.57□□□□□ -0.56
CD46-213ENST00000471987 VARSP26640 1264 aaKnown RBP11.56□□□□□ -0.56
CD46-213ENST00000471987 SH3D19Q5HYK7 790 aa11.56□□□□□ -0.56
CD46-213ENST00000471987 HPS1Q92902 700 aa11.56□□□□□ -0.56
CD46-213ENST00000471987 POTECB2RU33 542 aa11.55□□□□□ -0.56
CD46-213ENST00000471987 DACH1Q9UI36 760 aa11.54□□□□□ -0.56
CD46-213ENST00000471987 WASF2Q9Y6W5 498 aa11.54□□□□□ -0.56
CD46-213ENST00000471987 PLEKHG3A1L390 1219 aa11.52□□□□□ -0.57
CD46-213ENST00000471987 ARMC2Q8NEN0 867 aa11.52□□□□□ -0.57
CD46-213ENST00000471987 ATP1B4Q9UN42 357 aaPredicted RBP11.52□□□□□ -0.57
CD46-213ENST00000471987 MPNDQ8N594 471 aa11.51□□□□□ -0.57
CD46-213ENST00000471987 FAM174AQ8TBP5 190 aa11.5□□□□□ -0.57
CD46-213ENST00000471987 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.49□□□□□ -0.57
CD46-213ENST00000471987 GMPR2Q9P2T1 348 aaKnown RBP11.49□□□□□ -0.57
CD46-213ENST00000471987 TLL2Q9Y6L7 1015 aa11.49□□□□□ -0.57
CD46-213ENST00000471987 AGERQ15109 404 aa11.48□□□□□ -0.57
CD46-213ENST00000471987 BPHLQ86WA6 291 aaPredicted RBP11.48□□□□□ -0.57
CD46-213ENST00000471987 PROCA1Q8NCQ7 364 aaPredicted RBP11.48□□□□□ -0.57
CD46-213ENST00000471987 FOXJ1Q92949 421 aa11.48□□□□□ -0.57
CD46-213ENST00000471987 ZNF775Q96BV0 537 aaPredicted RBP11.48□□□□□ -0.57
CD46-213ENST00000471987 ATP13A2Q9NQ11 1180 aa11.48□□□□□ -0.57
CD46-213ENST00000471987 C11orf95C9JLR9 678 aaPredicted RBP11.47□□□□□ -0.57
CD46-213ENST00000471987 CTDSPL2Q05D32 466 aa11.47□□□□□ -0.57
CD46-213ENST00000471987 NBPF14Q5TI25 921 aa11.47□□□□□ -0.57
CD46-213ENST00000471987 PPP2R2DQ66LE6 453 aa11.47□□□□□ -0.57
CD46-213ENST00000471987 NEUROD2Q15784 382 aa11.45□□□□□ -0.58
CD46-213ENST00000471987 SENP2Q9HC62 589 aa11.44□□□□□ -0.58
CD46-213ENST00000471987 CAPN5O15484 640 aaPredicted RBP11.43□□□□□ -0.58
CD46-213ENST00000471987 GPKOWQ92917 476 aaPredicted RBP eCLIP11.43□□□□□ -0.582e-21■□□□□ 9.1
CD46-213ENST00000471987 CDK15Q96Q40 435 aa11.43□□□□□ -0.58
CD46-213ENST00000471987 ADH1CP00326 375 aa11.42□□□□□ -0.58
CD46-213ENST00000471987 NNTQ13423 1086 aa11.42□□□□□ -0.58
CD46-213ENST00000471987 C4orf48Q5BLP8 95 aa11.42□□□□□ -0.58
CD46-213ENST00000471987 FBXO31Q5XUX0 539 aaPredicted RBP11.42□□□□□ -0.58
CD46-213ENST00000471987 GOPCQ9HD26 462 aa11.42□□□□□ -0.58
CD46-213ENST00000471987 ARID5BQ14865 1188 aa11.41□□□□□ -0.58
CD46-213ENST00000471987 LRRN4Q8WUT4 740 aa11.41□□□□□ -0.58
CD46-213ENST00000471987 SH3RF1Q7Z6J0 888 aa11.4□□□□□ -0.58
CD46-213ENST00000471987 KIFC2Q96AC6 838 aa11.4□□□□□ -0.58
CD46-213ENST00000471987 TRIM47Q96LD4 638 aa11.4□□□□□ -0.58
CD46-213ENST00000471987 AP1G2O75843 785 aa11.39□□□□□ -0.59
CD46-213ENST00000471987 SH3BP5LQ7L8J4 393 aa11.39□□□□□ -0.59
CD46-213ENST00000471987 PCMTD1Q96MG8 357 aaPredicted RBP11.38□□□□□ -0.59
CD46-213ENST00000471987 C1QTNF2Q9BXJ5 285 aa11.38□□□□□ -0.59
CD46-213ENST00000471987 MAGEB6P1A0A0J9YX57 407 aa11.37□□□□□ -0.59
CD46-213ENST00000471987 NR5A1Q13285 461 aa11.37□□□□□ -0.59
CD46-213ENST00000471987 FKBPLQ9UIM3 349 aa11.37□□□□□ -0.59
CD46-213ENST00000471987 SNRPBP14678 240 aaKnown RBP11.36□□□□□ -0.59
CD46-213ENST00000471987 IL27Q8NEV9 243 aa11.36□□□□□ -0.59
CD46-213ENST00000471987 BMP1P13497 986 aa11.35□□□□□ -0.59
CD46-213ENST00000471987 RFC5P40937 340 aa11.35□□□□□ -0.59
CD46-213ENST00000471987 BRPF1P55201 1214 aaPredicted RBP11.35□□□□□ -0.59
CD46-213ENST00000471987 WDR4P57081 412 aaKnown RBP11.35□□□□□ -0.59
CD46-213ENST00000471987 NR6A1Q15406 480 aa11.35□□□□□ -0.59
CD46-213ENST00000471987 TPRNQ4KMQ1 711 aa11.35□□□□□ -0.59
CD46-213ENST00000471987 PDXDC2PQ6P474 469 aa11.35□□□□□ -0.59
CD46-213ENST00000471987 TRMT44Q8IYL2 757 aaKnown RBP11.35□□□□□ -0.59
CD46-213ENST00000471987 ZC3H4Q9UPT8 1303 aaKnown RBP11.35□□□□□ -0.59
CD46-213ENST00000471987 TIMP2P16035 220 aa11.34□□□□□ -0.59
CD46-213ENST00000471987 GRM5P41594 1212 aa11.34□□□□□ -0.59
CD46-213ENST00000471987 TRIM46Q7Z4K8 759 aa11.34□□□□□ -0.59
CD46-213ENST00000471987 CARD14Q9BXL6 1004 aa11.34□□□□□ -0.59
CD46-213ENST00000471987 MAP4K5Q9Y4K4 846 aa11.34□□□□□ -0.59
CD46-213ENST00000471987 USP17L8P0C7I0 530 aa11.33□□□□□ -0.6
CD46-213ENST00000471987 KLF16Q9BXK1 252 aaPredicted RBP11.33□□□□□ -0.6
CD46-213ENST00000471987 VASH1Q7L8A9 365 aaPredicted RBP11.32□□□□□ -0.6
CD46-213ENST00000471987 PNMA1Q8ND90 353 aa11.32□□□□□ -0.6
CD46-213ENST00000471987 ARHGAP9Q9BRR9 750 aa11.32□□□□□ -0.6
CD46-213ENST00000471987 NR3C2P08235 984 aa11.31□□□□□ -0.6
CD46-213ENST00000471987 ERFEQ4G0M1 354 aa11.31□□□□□ -0.6
CD46-213ENST00000471987 ZIC2O95409 532 aaPredicted RBP11.3□□□□□ -0.6
CD46-213ENST00000471987 TMEM259Q4ZIN3 620 aa11.3□□□□□ -0.6
CD46-213ENST00000471987 TREML4Q6UXN2 200 aa11.3□□□□□ -0.6
CD46-213ENST00000471987 FSHRP23945 695 aa11.29□□□□□ -0.6
CD46-213ENST00000471987 MRPL14Q6P1L8 145 aaKnown RBP11.29□□□□□ -0.6
CD46-213ENST00000471987 ZBTB33Q86T24 672 aa11.29□□□□□ -0.6
CD46-213ENST00000471987 PTK2Q05397 1052 aa11.28□□□□□ -0.6
CD46-213ENST00000471987 SCARF1Q14162 830 aa11.28□□□□□ -0.6
CD46-213ENST00000471987 ITPKCQ96DU7 683 aa11.28□□□□□ -0.6
CD46-213ENST00000471987 HMX1Q9NP08 348 aaPredicted RBP11.28□□□□□ -0.6
CD46-213ENST00000471987 GPSM3Q9Y4H4 160 aa11.28□□□□□ -0.6
CD46-213ENST00000471987 SLC10A4Q96EP9 437 aa11.27□□□□□ -0.61
CD46-213ENST00000471987 ZFP42Q96MM3 310 aa11.27□□□□□ -0.61
CD46-213ENST00000471987 ZFAND3Q9H8U3 227 aa11.27□□□□□ -0.61
CD46-213ENST00000471987 CDV3Q9UKY7 258 aaKnown RBP11.27□□□□□ -0.61
CD46-213ENST00000471987 EPS8L1Q8TE68 723 aa11.26□□□□□ -0.61
CD46-213ENST00000471987 WFS1O76024 890 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms