RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 DDX17Q92841 729 aaKnown RBP10.65□□□□□ -0.7
USP4-207ENST00000462673 ATP7BP35670 1465 aa10.65□□□□□ -0.7
USP4-207ENST00000462673 KTN1Q86UP2 1357 aaKnown RBP10.65□□□□□ -0.71
USP4-207ENST00000462673 NLRP6P59044 892 aa10.63□□□□□ -0.71
USP4-207ENST00000462673 KCNH5Q8NCM2 988 aa10.63□□□□□ -0.71
USP4-207ENST00000462673 NUTM2BA6NNL0 878 aaPredicted RBP10.62□□□□□ -0.71
USP4-207ENST00000462673 NUTM2EB1AL46 878 aaPredicted RBP10.62□□□□□ -0.71
USP4-207ENST00000462673 NUTM2AQ8IVF1 878 aaPredicted RBP10.62□□□□□ -0.71
USP4-207ENST00000462673 DISP3Q9P2K9 1392 aa10.62□□□□□ -0.71
USP4-207ENST00000462673 RGPD8O14715 1765 aaPredicted RBP10.62□□□□□ -0.71
USP4-207ENST00000462673 NHSL1Q5SYE7 1610 aa10.62□□□□□ -0.71
USP4-207ENST00000462673 TNS3Q68CZ2 1445 aa10.61□□□□□ -0.71
USP4-207ENST00000462673 SUPT16HQ9Y5B9 1047 aaKnown RBP10.61□□□□□ -0.71
USP4-207ENST00000462673 ANKRD36BQ8N2N9 1353 aa10.61□□□□□ -0.71
USP4-207ENST00000462673 PXDNQ92626 1479 aa10.61□□□□□ -0.71
USP4-207ENST00000462673 TTC21BQ7Z4L5 1316 aa10.6□□□□□ -0.71
USP4-207ENST00000462673 USP32Q8NFA0 1604 aa10.6□□□□□ -0.71
USP4-207ENST00000462673 NGLY1Q96IV0 654 aa10.6□□□□□ -0.71
USP4-207ENST00000462673 KNSTRNQ9Y448 316 aa10.6□□□□□ -0.71
USP4-207ENST00000462673 USP6P35125 1406 aa10.59□□□□□ -0.71
USP4-207ENST00000462673 CPSF1Q10570 1443 aaKnown RBP10.59□□□□□ -0.71
USP4-207ENST00000462673 ZNF772Q68DY9 489 aaPredicted RBP10.59□□□□□ -0.71
USP4-207ENST00000462673 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.59□□□□□ -0.71
USP4-207ENST00000462673 COG3Q96JB2 828 aa10.59□□□□□ -0.71
USP4-207ENST00000462673 PNPLA6Q8IY17 1366 aa10.59□□□□□ -0.71
USP4-207ENST00000462673 CGNL1Q0VF96 1302 aa10.58□□□□□ -0.71
USP4-207ENST00000462673 EDC4Q6P2E9 1401 aaKnown RBP10.58□□□□□ -0.72
USP4-207ENST00000462673 COL16A1Q07092 1604 aaPredicted RBP10.58□□□□□ -0.72
USP4-207ENST00000462673 ADAMTS2O95450 1211 aa10.58□□□□□ -0.72
USP4-207ENST00000462673 PANK3Q9H999 370 aa10.58□□□□□ -0.72
USP4-207ENST00000462673 GCP02774 474 aa10.57□□□□□ -0.72
USP4-207ENST00000462673 KIF7Q2M1P5 1343 aa10.57□□□□□ -0.72
USP4-207ENST00000462673 A0A1W2PP64 1363 aa10.56□□□□□ -0.72
USP4-207ENST00000462673 PLEKHG5O94827 1062 aa10.56□□□□□ -0.72
USP4-207ENST00000462673 NUTM2GQ5VZR2 741 aa10.56□□□□□ -0.72
USP4-207ENST00000462673 C8orf37Q96NL8 207 aa10.56□□□□□ -0.72
USP4-207ENST00000462673 SHPRHQ149N8 1683 aa10.56□□□□□ -0.72
USP4-207ENST00000462673 TOPAZ1Q8N9V7 1692 aa10.56□□□□□ -0.72
USP4-207ENST00000462673 C11orf95C9JLR9 678 aaPredicted RBP10.55□□□□□ -0.72
USP4-207ENST00000462673 EVA1CP58658 441 aa10.55□□□□□ -0.72
USP4-207ENST00000462673 CABLES1Q8TDN4 633 aa10.55□□□□□ -0.72
USP4-207ENST00000462673 PRDM11Q9NQV5 511 aa10.55□□□□□ -0.72
USP4-207ENST00000462673 WASHC2AQ641Q2 1341 aa10.55□□□□□ -0.72
USP4-207ENST00000462673 USP31Q70CQ4 1352 aa10.54□□□□□ -0.72
USP4-207ENST00000462673 CCDC7Q96M83 1385 aa10.54□□□□□ -0.72
USP4-207ENST00000462673 FYB1O15117 783 aa10.54□□□□□ -0.72
USP4-207ENST00000462673 SSH2Q76I76 1423 aa10.54□□□□□ -0.72
USP4-207ENST00000462673 POTEDQ86YR6 584 aa10.54□□□□□ -0.72
USP4-207ENST00000462673 FNBP4Q8N3X1 1017 aaPredicted RBP10.54□□□□□ -0.72
USP4-207ENST00000462673 ZC3H6P61129 1189 aaKnown RBP10.53□□□□□ -0.72
USP4-207ENST00000462673 ANP32EQ9BTT0 268 aa10.53□□□□□ -0.72
USP4-207ENST00000462673 USP21Q9UK80 565 aa10.53□□□□□ -0.72
USP4-207ENST00000462673 COL22A1Q8NFW1 1626 aaPredicted RBP10.52□□□□□ -0.73
USP4-207ENST00000462673 FAM83GA6ND36 823 aa10.52□□□□□ -0.73
USP4-207ENST00000462673 NME9Q86XW9 330 aa10.52□□□□□ -0.73
USP4-207ENST00000462673 CARD14Q9BXL6 1004 aa10.52□□□□□ -0.73
USP4-207ENST00000462673 TRPC5Q9UL62 973 aaPredicted RBP10.52□□□□□ -0.73
USP4-207ENST00000462673 NSD2O96028 1365 aa10.52□□□□□ -0.73
USP4-207ENST00000462673 CD163L1Q9NR16 1453 aa10.51□□□□□ -0.73
USP4-207ENST00000462673 MORC1Q86VD1 984 aa10.51□□□□□ -0.73
USP4-207ENST00000462673 UNC5CLQ8IV45 518 aa10.51□□□□□ -0.73
USP4-207ENST00000462673 GGNBP2Q9H3C7 697 aa10.51□□□□□ -0.73
USP4-207ENST00000462673 QTRT2Q9H974 415 aaKnown RBP10.51□□□□□ -0.73
USP4-207ENST00000462673 AKAP12Q02952 1782 aa10.51□□□□□ -0.73
USP4-207ENST00000462673 USP19O94966 1318 aa10.51□□□□□ -0.73
USP4-207ENST00000462673 CPDO75976 1380 aa10.51□□□□□ -0.73
USP4-207ENST00000462673 NSD3Q9BZ95 1437 aa10.5□□□□□ -0.73
USP4-207ENST00000462673 TRPM3Q9HCF6 1732 aaPredicted RBP10.5□□□□□ -0.73
USP4-207ENST00000462673 ZBTB7CA1YPR0 619 aa10.5□□□□□ -0.73
USP4-207ENST00000462673 RXRBP28702 533 aa10.5□□□□□ -0.73
USP4-207ENST00000462673 AMPHP49418 695 aa10.5□□□□□ -0.73
USP4-207ENST00000462673 TSHZ2Q9NRE2 1034 aa10.5□□□□□ -0.73
USP4-207ENST00000462673 BTG4Q9NY30 223 aa10.5□□□□□ -0.73
USP4-207ENST00000462673 CCDC9Q9Y3X0 531 aaKnown RBP10.5□□□□□ -0.73
USP4-207ENST00000462673 AFF2P51816 1311 aa10.5□□□□□ -0.73
USP4-207ENST00000462673 SOX12O15370 315 aa10.49□□□□□ -0.73
USP4-207ENST00000462673 ARHGEF25Q86VW2 580 aa10.49□□□□□ -0.73
USP4-207ENST00000462673 ALS2Q96Q42 1657 aa10.49□□□□□ -0.73
USP4-207ENST00000462673 MED1Q15648 1581 aaPredicted RBP10.48□□□□□ -0.73
USP4-207ENST00000462673 MON2Q7Z3U7 1717 aa10.48□□□□□ -0.73
USP4-207ENST00000462673 PER1O15534 1290 aaPredicted RBP10.48□□□□□ -0.73
USP4-207ENST00000462673 RBM6P78332 1123 aaKnown RBP10.48□□□□□ -0.73
USP4-207ENST00000462673 KIF24Q5T7B8 1368 aa10.48□□□□□ -0.73
USP4-207ENST00000462673 AATKQ6ZMQ8 1374 aa10.48□□□□□ -0.73
USP4-207ENST00000462673 KIAA0232Q92628 1395 aa10.48□□□□□ -0.73
USP4-207ENST00000462673 CSB-PGBD3P0DP91 1061 aa10.47□□□□□ -0.73
USP4-207ENST00000462673 VPS72Q15906 364 aa10.47□□□□□ -0.73
USP4-207ENST00000462673 IP6K1Q92551 441 aa10.47□□□□□ -0.73
USP4-207ENST00000462673 DDX10Q13206 875 aaKnown RBP10.46□□□□□ -0.73
USP4-207ENST00000462673 CHRNA2Q15822 529 aa10.46□□□□□ -0.73
USP4-207ENST00000462673 GJD4Q96KN9 370 aaPredicted RBP10.46□□□□□ -0.73
USP4-207ENST00000462673 STRN4Q9NRL3 753 aa10.46□□□□□ -0.73
USP4-207ENST00000462673 ZRANB1Q9UGI0 708 aa10.46□□□□□ -0.73
USP4-207ENST00000462673 THRAP3Q9Y2W1 955 aaKnown RBP10.46□□□□□ -0.73
USP4-207ENST00000462673 NPC1L1Q9UHC9 1359 aa10.46□□□□□ -0.74
USP4-207ENST00000462673 PPM1GO15355 546 aaPredicted RBP10.45□□□□□ -0.74
USP4-207ENST00000462673 AMER1Q5JTC6 1135 aaPredicted RBP10.45□□□□□ -0.74
USP4-207ENST00000462673 TOM1L2Q6ZVM7 507 aa10.45□□□□□ -0.74
USP4-207ENST00000462673 CDCA7Q9BWT1 371 aaPredicted RBP10.45□□□□□ -0.74
USP4-207ENST00000462673 LRP6O75581 1613 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms