RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 CTHP32929 405 aa10.18□□□□□ -0.78
CLK1-203ENST00000409769 BAP1Q92560 729 aa10.18□□□□□ -0.78
CLK1-203ENST00000409769 CFAP99D6REC4 459 aa10.17□□□□□ -0.78
CLK1-203ENST00000409769 LINC01559Q495D7 138 aa10.16□□□□□ -0.78
CLK1-203ENST00000409769 MYSM1Q5VVJ2 828 aa10.16□□□□□ -0.78
CLK1-203ENST00000409769 RSPH6AQ9H0K4 717 aa10.16□□□□□ -0.78
CLK1-203ENST00000409769 SLC24A3Q9HC58 644 aa10.16□□□□□ -0.78
CLK1-203ENST00000409769 F12P00748 615 aaPredicted RBP10.15□□□□□ -0.78
CLK1-203ENST00000409769 FAM174AQ8TBP5 190 aa10.14□□□□□ -0.79
CLK1-203ENST00000409769 NUTM2BA6NNL0 878 aaPredicted RBP10.13□□□□□ -0.79
CLK1-203ENST00000409769 NUTM2EB1AL46 878 aaPredicted RBP10.13□□□□□ -0.79
CLK1-203ENST00000409769 CAPN5O15484 640 aaPredicted RBP10.13□□□□□ -0.79
CLK1-203ENST00000409769 NUTM2DQ5VT03 806 aaPredicted RBP10.13□□□□□ -0.79
CLK1-203ENST00000409769 NUTM2AQ8IVF1 878 aaPredicted RBP10.13□□□□□ -0.79
CLK1-203ENST00000409769 ARMC2Q8NEN0 867 aa10.13□□□□□ -0.79
CLK1-203ENST00000409769 HELBQ8NG08 1087 aaPredicted RBP10.13□□□□□ -0.79
CLK1-203ENST00000409769 LILRB3O75022 631 aa10.12□□□□□ -0.79
CLK1-203ENST00000409769 WFS1O76024 890 aa10.12□□□□□ -0.79
CLK1-203ENST00000409769 CSPP1Q1MSJ5 1256 aa10.12□□□□□ -0.79
CLK1-203ENST00000409769 LCE2AQ5TA79 106 aaPredicted RBP10.12□□□□□ -0.79
CLK1-203ENST00000409769 CABLES1Q8TDN4 633 aa10.12□□□□□ -0.79
CLK1-203ENST00000409769 LIMD1Q9UGP4 676 aa10.12□□□□□ -0.79
CLK1-203ENST00000409769 CLK2P49760 499 aaKnown RBP10.11□□□□□ -0.79
CLK1-203ENST00000409769 TLL2Q9Y6L7 1015 aa10.11□□□□□ -0.79
CLK1-203ENST00000409769 MAP10Q9P2G4 905 aa10.1□□□□□ -0.79
CLK1-203ENST00000409769 SNRPBP14678 240 aaKnown RBP10.09□□□□□ -0.79
CLK1-203ENST00000409769 BPHLQ86WA6 291 aaPredicted RBP10.09□□□□□ -0.79
CLK1-203ENST00000409769 CDK15Q96Q40 435 aa10.09□□□□□ -0.79
CLK1-203ENST00000409769 NFX1Q12986 1120 aaKnown RBP10.08□□□□□ -0.8
CLK1-203ENST00000409769 NNTQ13423 1086 aa10.08□□□□□ -0.8
CLK1-203ENST00000409769 QPCTQ16769 361 aa10.08□□□□□ -0.8
CLK1-203ENST00000409769 NBPF14Q5TI25 921 aa10.08□□□□□ -0.8
CLK1-203ENST00000409769 TSC1Q92574 1164 aa10.08□□□□□ -0.8
CLK1-203ENST00000409769 ADH1CP00326 375 aa10.07□□□□□ -0.8
CLK1-203ENST00000409769 TERTO14746 1132 aaKnown RBP10.06□□□□□ -0.8
CLK1-203ENST00000409769 AGERQ15109 404 aa10.06□□□□□ -0.8
CLK1-203ENST00000409769 GPKOWQ92917 476 aaPredicted RBP eCLIP10.06□□□□□ -0.85e-12■□□□□ 8.3
CLK1-203ENST00000409769 PER1O15534 1290 aaPredicted RBP10.05□□□□□ -0.8
CLK1-203ENST00000409769 NR5A1Q13285 461 aa10.05□□□□□ -0.8
CLK1-203ENST00000409769 TRIM46Q7Z4K8 759 aa10.05□□□□□ -0.8
CLK1-203ENST00000409769 FOXJ1Q92949 421 aa10.05□□□□□ -0.8
CLK1-203ENST00000409769 WIPF1O43516 503 aa10.04□□□□□ -0.8
CLK1-203ENST00000409769 NPAS3Q8IXF0 933 aa10.04□□□□□ -0.8
CLK1-203ENST00000409769 BMP1P13497 986 aa10.03□□□□□ -0.8
CLK1-203ENST00000409769 SCARF1Q14162 830 aa10.03□□□□□ -0.8
CLK1-203ENST00000409769 SLC16A10Q8TF71 515 aa10.03□□□□□ -0.8
CLK1-203ENST00000409769 DDRGK1Q96HY6 314 aa10.03□□□□□ -0.8
CLK1-203ENST00000409769 TIMP2P16035 220 aa10.02□□□□□ -0.81
CLK1-203ENST00000409769 WDR4P57081 412 aaKnown RBP10.02□□□□□ -0.81
CLK1-203ENST00000409769 INSM1Q01101 510 aaPredicted RBP10.01□□□□□ -0.81
CLK1-203ENST00000409769 RTL5Q5HYW3 569 aaPredicted RBP10.01□□□□□ -0.81
CLK1-203ENST00000409769 NXF1Q9UBU9 619 aaKnown RBP10.01□□□□□ -0.81
CLK1-203ENST00000409769 ARID5BQ14865 1188 aa10□□□□□ -0.81
CLK1-203ENST00000409769 SKIV2LQ15477 1246 aaKnown RBP10□□□□□ -0.81
CLK1-203ENST00000409769 SH3D19Q5HYK7 790 aa10□□□□□ -0.81
CLK1-203ENST00000409769 MRPL14Q6P1L8 145 aaKnown RBP10□□□□□ -0.81
CLK1-203ENST00000409769 SH3RF1Q7Z6J0 888 aa10□□□□□ -0.81
CLK1-203ENST00000409769 C1QTNF2Q9BXJ5 285 aa10□□□□□ -0.81
CLK1-203ENST00000409769 POLR3EQ9NVU0 708 aa10□□□□□ -0.81
CLK1-203ENST00000409769 MAP4K5Q9Y4K4 846 aa10□□□□□ -0.81
CLK1-203ENST00000409769 C4orf48Q5BLP8 95 aa9.99□□□□□ -0.81
CLK1-203ENST00000409769 TRMT44Q8IYL2 757 aaKnown RBP9.99□□□□□ -0.81
CLK1-203ENST00000409769 ZFP42Q96MM3 310 aa9.99□□□□□ -0.81
CLK1-203ENST00000409769 KLF16Q9BXK1 252 aaPredicted RBP9.99□□□□□ -0.81
CLK1-203ENST00000409769 SH3BP5LQ7L8J4 393 aa9.98□□□□□ -0.81
CLK1-203ENST00000409769 KDM4CQ9H3R0 1056 aa9.97□□□□□ -0.81
CLK1-203ENST00000409769 ZC3H4Q9UPT8 1303 aaKnown RBP9.97□□□□□ -0.81
CLK1-203ENST00000409769 GRM5P41594 1212 aa9.96□□□□□ -0.82
CLK1-203ENST00000409769 PPP2R2DQ66LE6 453 aa9.96□□□□□ -0.82
CLK1-203ENST00000409769 STK17AQ9UEE5 414 aa9.96□□□□□ -0.82
CLK1-203ENST00000409769 ZIC2O95409 532 aaPredicted RBP9.95□□□□□ -0.82
CLK1-203ENST00000409769 TPRNQ4KMQ1 711 aa9.95□□□□□ -0.82
CLK1-203ENST00000409769 PDXDC2PQ6P474 469 aa9.95□□□□□ -0.82
CLK1-203ENST00000409769 IRF7Q92985 503 aa9.95□□□□□ -0.82
CLK1-203ENST00000409769 UPP2O95045 317 aa9.94□□□□□ -0.82
CLK1-203ENST00000409769 CTDSPL2Q05D32 466 aa9.94□□□□□ -0.82
CLK1-203ENST00000409769 VASH1Q7L8A9 365 aaPredicted RBP9.94□□□□□ -0.82
CLK1-203ENST00000409769 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.94□□□□□ -0.82
CLK1-203ENST00000409769 CDV3Q9UKY7 258 aaKnown RBP9.94□□□□□ -0.82
CLK1-203ENST00000409769 ITPKCQ96DU7 683 aa9.93□□□□□ -0.82
CLK1-203ENST00000409769 PURBQ96QR8 312 aaKnown RBP9.93□□□□□ -0.82
CLK1-203ENST00000409769 FKBPLQ9UIM3 349 aa9.93□□□□□ -0.82
CLK1-203ENST00000409769 EMILIN1Q9Y6C2 1016 aa9.93□□□□□ -0.82
CLK1-203ENST00000409769 MAGEB6P1A0A0J9YX57 407 aa9.92□□□□□ -0.82
CLK1-203ENST00000409769 NR3C2P08235 984 aa9.92□□□□□ -0.82
CLK1-203ENST00000409769 FSHRP23945 695 aa9.92□□□□□ -0.82
CLK1-203ENST00000409769 PNMA1Q8ND90 353 aa9.92□□□□□ -0.82
CLK1-203ENST00000409769 FAM117AQ9C073 453 aa9.91□□□□□ -0.82
CLK1-203ENST00000409769 ZFAND3Q9H8U3 227 aa9.91□□□□□ -0.82
CLK1-203ENST00000409769 GPBP1L1Q9HC44 474 aaPredicted RBP9.91□□□□□ -0.82
CLK1-203ENST00000409769 ATP1B4Q9UN42 357 aaPredicted RBP9.91□□□□□ -0.82
CLK1-203ENST00000409769 H3BM21 787 aa9.9□□□□□ -0.82
CLK1-203ENST00000409769 ERFEQ4G0M1 354 aa9.9□□□□□ -0.82
CLK1-203ENST00000409769 CCDC116Q8IYX3 515 aa9.9□□□□□ -0.82
CLK1-203ENST00000409769 MEIOBQ8N635 442 aa9.9□□□□□ -0.82
CLK1-203ENST00000409769 ARHGAP9Q9BRR9 750 aa9.9□□□□□ -0.82
CLK1-203ENST00000409769 GPSM3Q9Y4H4 160 aa9.9□□□□□ -0.82
CLK1-203ENST00000409769 LINC00528Q8N1L1 170 aa9.88□□□□□ -0.83
CLK1-203ENST00000409769 SLC10A4Q96EP9 437 aa9.88□□□□□ -0.83
CLK1-203ENST00000409769 CARD14Q9BXL6 1004 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms