RNA–Protein interactions for RNA: ENST00000396464.7

GABPB1-204, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,401 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-204ENST00000396464 TBC1D2Q9BYX2 928 aa8.33□□□□□ -1.08
GABPB1-204ENST00000396464 SH3BP2P78314 561 aa8.32□□□□□ -1.08
GABPB1-204ENST00000396464 BAP1Q92560 729 aa8.32□□□□□ -1.08
GABPB1-204ENST00000396464 PLEKHG3A1L390 1219 aa8.31□□□□□ -1.08
GABPB1-204ENST00000396464 CAPN5O15484 640 aaPredicted RBP8.31□□□□□ -1.08
GABPB1-204ENST00000396464 DESI1Q6ICB0 168 aa8.31□□□□□ -1.08
GABPB1-204ENST00000396464 GJA5P36382 358 aa8.3□□□□□ -1.08
GABPB1-204ENST00000396464 AK7Q96M32 723 aa8.3□□□□□ -1.08
GABPB1-204ENST00000396464 CCDC9Q9Y3X0 531 aaKnown RBP8.3□□□□□ -1.08
GABPB1-204ENST00000396464 SIAH2O43255 324 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 RSBN1LQ6PCB5 846 aaPredicted RBP8.29□□□□□ -1.08
GABPB1-204ENST00000396464 PARP9Q8IXQ6 854 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 ARID3AQ99856 593 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 ZMYND15Q9H091 742 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 RSPH6AQ9H0K4 717 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 ZBTB3Q9H5J0 574 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 TRIM66O15016 1216 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 VARSP26640 1264 aaKnown RBP8.29□□□□□ -1.08
GABPB1-204ENST00000396464 ZNF511Q8NB15 262 aa8.29□□□□□ -1.08
GABPB1-204ENST00000396464 TERTO14746 1132 aaKnown RBP8.28□□□□□ -1.08
GABPB1-204ENST00000396464 TSC1Q92574 1164 aa8.28□□□□□ -1.08
GABPB1-204ENST00000396464 BMP1P13497 986 aa8.27□□□□□ -1.09
GABPB1-204ENST00000396464 INSM1Q01101 510 aaPredicted RBP8.27□□□□□ -1.09
GABPB1-204ENST00000396464 NFX1Q12986 1120 aaKnown RBP8.27□□□□□ -1.09
GABPB1-204ENST00000396464 AGERQ15109 404 aa8.27□□□□□ -1.09
GABPB1-204ENST00000396464 CSPP1Q1MSJ5 1256 aa8.27□□□□□ -1.09
GABPB1-204ENST00000396464 LCE2AQ5TA79 106 aaPredicted RBP8.27□□□□□ -1.09
GABPB1-204ENST00000396464 RIC3Q7Z5B4 369 aa8.27□□□□□ -1.09
GABPB1-204ENST00000396464 FAM174AQ8TBP5 190 aa8.27□□□□□ -1.09
GABPB1-204ENST00000396464 SLC16A10Q8TF71 515 aa8.27□□□□□ -1.09
GABPB1-204ENST00000396464 TLL2Q9Y6L7 1015 aa8.27□□□□□ -1.09
GABPB1-204ENST00000396464 NUTM2BA6NNL0 878 aaPredicted RBP8.26□□□□□ -1.09
GABPB1-204ENST00000396464 NUTM2EB1AL46 878 aaPredicted RBP8.26□□□□□ -1.09
GABPB1-204ENST00000396464 SPTLC1O15269 473 aa8.26□□□□□ -1.09
GABPB1-204ENST00000396464 NUTM2DQ5VT03 806 aaPredicted RBP8.26□□□□□ -1.09
GABPB1-204ENST00000396464 LYPD8Q6UX82 237 aa8.26□□□□□ -1.09
GABPB1-204ENST00000396464 NUTM2AQ8IVF1 878 aaPredicted RBP8.26□□□□□ -1.09
GABPB1-204ENST00000396464 PCDHB15Q9Y5E8 787 aa8.26□□□□□ -1.09
GABPB1-204ENST00000396464 TTBK1Q5TCY1 1321 aaPredicted RBP8.26□□□□□ -1.09
GABPB1-204ENST00000396464 NNTQ13423 1086 aa8.24□□□□□ -1.09
GABPB1-204ENST00000396464 ARID5BQ14865 1188 aa8.24□□□□□ -1.09
GABPB1-204ENST00000396464 PRPF38BQ5VTL8 546 aaKnown RBP8.24□□□□□ -1.09
GABPB1-204ENST00000396464 ZBTB7CA1YPR0 619 aa8.23□□□□□ -1.09
GABPB1-204ENST00000396464 CFAP99D6REC4 459 aa8.23□□□□□ -1.09
GABPB1-204ENST00000396464 SCARF1Q14162 830 aa8.23□□□□□ -1.09
GABPB1-204ENST00000396464 C1orf115Q9H7X2 142 aa8.23□□□□□ -1.09
GABPB1-204ENST00000396464 TRIM46Q7Z4K8 759 aa8.22□□□□□ -1.09
GABPB1-204ENST00000396464 CABLES1Q8TDN4 633 aa8.22□□□□□ -1.09
GABPB1-204ENST00000396464 WIPF1O43516 503 aa8.21□□□□□ -1.09
GABPB1-204ENST00000396464 WDR4P57081 412 aaKnown RBP8.21□□□□□ -1.09
GABPB1-204ENST00000396464 MPNDQ8N594 471 aa8.21□□□□□ -1.09
GABPB1-204ENST00000396464 SLC24A3Q9HC58 644 aa8.21□□□□□ -1.09
GABPB1-204ENST00000396464 MAP10Q9P2G4 905 aa8.21□□□□□ -1.09
GABPB1-204ENST00000396464 NXF1Q9UBU9 619 aaKnown RBP8.21□□□□□ -1.09
GABPB1-204ENST00000396464 STK17AQ9UEE5 414 aa8.21□□□□□ -1.09
GABPB1-204ENST00000396464 ADH1CP00326 375 aa8.2□□□□□ -1.1
GABPB1-204ENST00000396464 PDE4DQ08499 809 aa8.2□□□□□ -1.1
GABPB1-204ENST00000396464 LOC105371045A0A1W2PR82 267 aa8.2□□□□□ -1.1
GABPB1-204ENST00000396464 BPHLQ86WA6 291 aaPredicted RBP8.2□□□□□ -1.1
GABPB1-204ENST00000396464 ARMC2Q8NEN0 867 aa8.2□□□□□ -1.1
GABPB1-204ENST00000396464 HELBQ8NG08 1087 aaPredicted RBP8.2□□□□□ -1.1
GABPB1-204ENST00000396464 FOXJ1Q92949 421 aa8.19□□□□□ -1.1
GABPB1-204ENST00000396464 ZFP42Q96MM3 310 aa8.19□□□□□ -1.1
GABPB1-204ENST00000396464 MYSM1Q5VVJ2 828 aa8.18□□□□□ -1.1
GABPB1-204ENST00000396464 MRPL14Q6P1L8 145 aaKnown RBP8.18□□□□□ -1.1
GABPB1-204ENST00000396464 IRF7Q92985 503 aa8.18□□□□□ -1.1
GABPB1-204ENST00000396464 F12P00748 615 aaPredicted RBP8.17□□□□□ -1.1
GABPB1-204ENST00000396464 PDIA4P13667 645 aaKnown RBP8.17□□□□□ -1.1
GABPB1-204ENST00000396464 PURBQ96QR8 312 aaKnown RBP8.17□□□□□ -1.1
GABPB1-204ENST00000396464 LIMD1Q9UGP4 676 aa8.17□□□□□ -1.1
GABPB1-204ENST00000396464 ATP1B4Q9UN42 357 aaPredicted RBP8.17□□□□□ -1.1
GABPB1-204ENST00000396464 FAM181BA6NEQ2 426 aa8.16□□□□□ -1.1
GABPB1-204ENST00000396464 PER1O15534 1290 aaPredicted RBP8.16□□□□□ -1.1
GABPB1-204ENST00000396464 UPP2O95045 317 aa8.16□□□□□ -1.1
GABPB1-204ENST00000396464 TIMP2P16035 220 aa8.16□□□□□ -1.1
GABPB1-204ENST00000396464 NR5A1Q13285 461 aa8.16□□□□□ -1.1
GABPB1-204ENST00000396464 NBPF14Q5TI25 921 aa8.16□□□□□ -1.1
GABPB1-204ENST00000396464 NPAS3Q8IXF0 933 aa8.16□□□□□ -1.1
GABPB1-204ENST00000396464 ZIC2O95409 532 aaPredicted RBP8.15□□□□□ -1.1
GABPB1-204ENST00000396464 QPCTQ16769 361 aa8.15□□□□□ -1.1
GABPB1-204ENST00000396464 CDK15Q96Q40 435 aa8.15□□□□□ -1.1
GABPB1-204ENST00000396464 CLK2P49760 499 aaKnown RBP8.14□□□□□ -1.11
GABPB1-204ENST00000396464 VEGFBP49765 207 aa8.14□□□□□ -1.11
GABPB1-204ENST00000396464 TUSC1Q2TAM9 212 aa8.14□□□□□ -1.11
GABPB1-204ENST00000396464 LILRB3O75022 631 aa8.13□□□□□ -1.11
GABPB1-204ENST00000396464 MAGEB6P1A0A0J9YX57 407 aa8.12□□□□□ -1.11
GABPB1-204ENST00000396464 MAN1A2O60476 641 aa8.12□□□□□ -1.11
GABPB1-204ENST00000396464 C6orf118Q5T5N4 469 aa8.12□□□□□ -1.11
GABPB1-204ENST00000396464 POLR3EQ9NVU0 708 aa8.12□□□□□ -1.11
GABPB1-204ENST00000396464 ARID3CA6NKF2 412 aa8.12□□□□□ -1.11
GABPB1-204ENST00000396464 H3BM21 787 aa8.12□□□□□ -1.11
GABPB1-204ENST00000396464 VASH1Q7L8A9 365 aaPredicted RBP8.12□□□□□ -1.11
GABPB1-204ENST00000396464 ZFAND3Q9H8U3 227 aa8.12□□□□□ -1.11
GABPB1-204ENST00000396464 BMP2P12643 396 aa8.11□□□□□ -1.11
GABPB1-204ENST00000396464 GMPRP36959 345 aa8.11□□□□□ -1.11
GABPB1-204ENST00000396464 RTL5Q5HYW3 569 aaPredicted RBP8.11□□□□□ -1.11
GABPB1-204ENST00000396464 ITPKCQ96DU7 683 aa8.11□□□□□ -1.11
GABPB1-204ENST00000396464 FSHRP23945 695 aa8.1□□□□□ -1.11
GABPB1-204ENST00000396464 C4orf48Q5BLP8 95 aa8.1□□□□□ -1.11
GABPB1-204ENST00000396464 LCE2CQ5TA81 110 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms