RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 NEUROD6Q96NK8 337 aa11.53□□□□□ -0.56
CUX1-203ENST00000360264 CCDC7Q96M83 1385 aa11.53□□□□□ -0.56
CUX1-203ENST00000360264 COG6Q9Y2V7 657 aa11.52□□□□□ -0.56
CUX1-203ENST00000360264 ANKRD1Q15327 319 aa11.52□□□□□ -0.57
CUX1-203ENST00000360264 TRIM22Q8IYM9 498 aa11.52□□□□□ -0.57
CUX1-203ENST00000360264 SF3B2Q13435 895 aaKnown RBP11.52□□□□□ -0.57
CUX1-203ENST00000360264 GOLGA6L7A0A1B0GV03 622 aa11.52□□□□□ -0.57
CUX1-203ENST00000360264 H0YHG0 523 aa11.52□□□□□ -0.57
CUX1-203ENST00000360264 GBP2P32456 591 aaPredicted RBP11.52□□□□□ -0.57
CUX1-203ENST00000360264 C22orf23Q9BZE7 217 aa11.52□□□□□ -0.57
CUX1-203ENST00000360264 GNAI3P08754 354 aa11.52□□□□□ -0.57
CUX1-203ENST00000360264 BMP2KQ9NSY1 1161 aaPredicted RBP11.52□□□□□ -0.57
CUX1-203ENST00000360264 SEPT7Q16181 437 aaKnown RBP11.51□□□□□ -0.57
CUX1-203ENST00000360264 AEBP1Q8IUX7 1158 aa11.51□□□□□ -0.57
CUX1-203ENST00000360264 CRBNQ96SW2 442 aa11.51□□□□□ -0.57
CUX1-203ENST00000360264 SRCIN1Q9C0H9 1055 aa11.51□□□□□ -0.57
CUX1-203ENST00000360264 FYB1O15117 783 aa11.51□□□□□ -0.57
CUX1-203ENST00000360264 ABTB2Q8N961 1025 aa11.51□□□□□ -0.57
CUX1-203ENST00000360264 CDKL5O76039 1030 aa11.5□□□□□ -0.57
CUX1-203ENST00000360264 PPFIBP1Q86W92 1011 aa11.5□□□□□ -0.57
CUX1-203ENST00000360264 SMC2O95347 1197 aa11.5□□□□□ -0.57
CUX1-203ENST00000360264 NASPP49321 788 aaPredicted RBP11.5□□□□□ -0.57
CUX1-203ENST00000360264 ZSCAN25Q6NSZ9 544 aa11.5□□□□□ -0.57
CUX1-203ENST00000360264 NECTIN2Q92692 538 aa11.5□□□□□ -0.57
CUX1-203ENST00000360264 MROH2BQ7Z745 1585 aa11.5□□□□□ -0.57
CUX1-203ENST00000360264 APAF1O14727 1248 aa11.49□□□□□ -0.57
CUX1-203ENST00000360264 PHF23Q9BUL5 403 aaPredicted RBP11.49□□□□□ -0.57
CUX1-203ENST00000360264 DEF6Q9H4E7 631 aa11.49□□□□□ -0.57
CUX1-203ENST00000360264 CCDC66A2RUB6 948 aa11.49□□□□□ -0.57
CUX1-203ENST00000360264 KRT18P05783 430 aaKnown RBP11.49□□□□□ -0.57
CUX1-203ENST00000360264 MRE11P49959 708 aa11.49□□□□□ -0.57
CUX1-203ENST00000360264 CBFA2T2O43439 604 aa11.49□□□□□ -0.57
CUX1-203ENST00000360264 LEKR1Q6ZMV7 388 aa11.48□□□□□ -0.57
CUX1-203ENST00000360264 NOL7Q9UMY1 257 aaKnown RBP11.48□□□□□ -0.57
CUX1-203ENST00000360264 CTNNA3Q9UI47 895 aa11.48□□□□□ -0.57
CUX1-203ENST00000360264 INCENPQ9NQS7 918 aa11.48□□□□□ -0.57
CUX1-203ENST00000360264 PRKRIP1Q9H875 184 aaPredicted RBP11.48□□□□□ -0.57
CUX1-203ENST00000360264 FANCIQ9NVI1 1328 aa11.48□□□□□ -0.57
CUX1-203ENST00000360264 TRIM5Q9C035 493 aa11.48□□□□□ -0.57
CUX1-203ENST00000360264 WIZO95785 1651 aa11.48□□□□□ -0.57
CUX1-203ENST00000360264 PDILTQ8N807 584 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 SAMD1Q6SPF0 538 aaPredicted RBP11.47□□□□□ -0.57
CUX1-203ENST00000360264 POTEJP0CG39 1038 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 AIMP1Q12904 312 aaKnown RBP11.47□□□□□ -0.57
CUX1-203ENST00000360264 SURF6O75683 361 aaKnown RBP11.47□□□□□ -0.57
CUX1-203ENST00000360264 NLRP6P59044 892 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 CNTLNQ9NXG0 1405 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 TTC39AQ5SRH9 613 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 CAVIN1Q6NZI2 390 aaKnown RBP11.47□□□□□ -0.57
CUX1-203ENST00000360264 WASF1Q92558 559 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 CCDC57Q2TAC2 916 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 GAPVD1Q14C86 1478 aa11.47□□□□□ -0.57
CUX1-203ENST00000360264 FANCD2Q9BXW9 1451 aa11.46□□□□□ -0.57
CUX1-203ENST00000360264 CCT4P50991 539 aaKnown RBP11.46□□□□□ -0.57
CUX1-203ENST00000360264 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.46□□□□□ -0.57
CUX1-203ENST00000360264 FOSBP53539 338 aa11.46□□□□□ -0.57
CUX1-203ENST00000360264 FAM13BQ9NYF5 915 aa11.46□□□□□ -0.57
CUX1-203ENST00000360264 TNIP1Q15025 636 aa11.46□□□□□ -0.57
CUX1-203ENST00000360264 GCC1Q96CN9 775 aa11.46□□□□□ -0.57
CUX1-203ENST00000360264 PLEKHH2Q8IVE3 1493 aa11.46□□□□□ -0.57
CUX1-203ENST00000360264 PLIN1O60240 522 aa11.46□□□□□ -0.57
CUX1-203ENST00000360264 BRD4O60885 1362 aaPredicted RBP11.46□□□□□ -0.58
CUX1-203ENST00000360264 FAM69CQ0P6D2 419 aa11.46□□□□□ -0.58
CUX1-203ENST00000360264 CEP131Q9UPN4 1083 aa11.46□□□□□ -0.58
CUX1-203ENST00000360264 MPHOSPH8Q99549 860 aa11.46□□□□□ -0.58
CUX1-203ENST00000360264 SOGA3Q5TF21 947 aa11.46□□□□□ -0.58
CUX1-203ENST00000360264 WDHD1O75717 1129 aaPredicted RBP11.46□□□□□ -0.58
CUX1-203ENST00000360264 GNAI2P04899 355 aa11.45□□□□□ -0.58
CUX1-203ENST00000360264 PPP1R12BO60237 982 aaPredicted RBP11.45□□□□□ -0.58
CUX1-203ENST00000360264 CCDC69A6NI79 296 aa11.45□□□□□ -0.58
CUX1-203ENST00000360264 EXOC6Q8TAG9 804 aa11.45□□□□□ -0.58
CUX1-203ENST00000360264 CCDC192P0DO97 292 aa11.45□□□□□ -0.58
CUX1-203ENST00000360264 ARHGAP5Q13017 1502 aa11.45□□□□□ -0.58
CUX1-203ENST00000360264 SMARCA4P51532 1647 aa11.45□□□□□ -0.58
CUX1-203ENST00000360264 SPG7Q9UQ90 795 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 TMOD2Q9NZR1 351 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 TATP17735 454 aaPredicted RBP11.44□□□□□ -0.58
CUX1-203ENST00000360264 PDCL3Q9H2J4 239 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 ZNF287Q9HBT7 754 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 TSPY26PQ9H489 355 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 JAKMIP3Q5VZ66 844 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 CNNM1Q9NRU3 951 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 CFAP45Q9UL16 551 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 EIF3JO75822 258 aaKnown RBP11.44□□□□□ -0.58
CUX1-203ENST00000360264 CYB5RLQ6IPT4 315 aa11.44□□□□□ -0.58
CUX1-203ENST00000360264 TSHZ2Q9NRE2 1034 aa11.43□□□□□ -0.58
CUX1-203ENST00000360264 ENOX2Q16206 610 aaKnown RBP11.43□□□□□ -0.58
CUX1-203ENST00000360264 UBAC1Q9BSL1 405 aa11.43□□□□□ -0.58
CUX1-203ENST00000360264 NEBLO76041 1014 aa11.43□□□□□ -0.58
CUX1-203ENST00000360264 STK38Q15208 465 aa11.43□□□□□ -0.58
CUX1-203ENST00000360264 ANKRD50Q9ULJ7 1429 aa11.43□□□□□ -0.58
CUX1-203ENST00000360264 ZNF428Q96B54 188 aa11.42□□□□□ -0.58
CUX1-203ENST00000360264 KIAA0754O94854 1291 aa11.42□□□□□ -0.58
CUX1-203ENST00000360264 HMOX1P09601 288 aa11.42□□□□□ -0.58
CUX1-203ENST00000360264 TSPYL1Q9H0U9 437 aa11.42□□□□□ -0.58
CUX1-203ENST00000360264 NEFHP12036 1026 aa11.42□□□□□ -0.58
CUX1-203ENST00000360264 SEC63Q9UGP8 760 aaKnown RBP11.42□□□□□ -0.58
CUX1-203ENST00000360264 PDE3AQ14432 1141 aa11.42□□□□□ -0.58
CUX1-203ENST00000360264 MPHOSPH10O00566 681 aaKnown RBP11.42□□□□□ -0.58
CUX1-203ENST00000360264 FEZ1Q99689 392 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms