RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FAM193AP78312 1265 aa16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 CRACR2AQ9BSW2 395 aa16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 MYBBP1AQ9BQG0 1328 aaKnown RBP16.48■□□□□ 0.23
CCDC88A-201ENST00000263630 EPB41L2O43491 1005 aaKnown RBP16.48■□□□□ 0.23
CCDC88A-201ENST00000263630 PKD2Q13563 968 aa16.48■□□□□ 0.23
CCDC88A-201ENST00000263630 TMCO3Q6UWJ1 677 aa16.48■□□□□ 0.23
CCDC88A-201ENST00000263630 CCDC102AQ96A19 550 aa16.48■□□□□ 0.23
CCDC88A-201ENST00000263630 FYB1O15117 783 aa16.47■□□□□ 0.23
CCDC88A-201ENST00000263630 PPM1FP49593 454 aaPredicted RBP16.47■□□□□ 0.23
CCDC88A-201ENST00000263630 TAF4BQ92750 862 aa16.47■□□□□ 0.23
CCDC88A-201ENST00000263630 FANCIQ9NVI1 1328 aa16.46■□□□□ 0.23
CCDC88A-201ENST00000263630 POLR3GO15318 223 aaPredicted RBP16.46■□□□□ 0.23
CCDC88A-201ENST00000263630 BMP2KQ9NSY1 1161 aaPredicted RBP16.46■□□□□ 0.23
CCDC88A-201ENST00000263630 IMMTQ16891 758 aaKnown RBP16.46■□□□□ 0.22
CCDC88A-201ENST00000263630 DAAM2Q86T65 1068 aa16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 SMC1AQ14683 1233 aaKnown RBP16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 BMS1Q14692 1282 aaKnown RBP16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 KIAA1328Q86T90 577 aa16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 TNIKQ9UKE5 1360 aa16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 EIF2S2P20042 333 aaKnown RBP16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 C22orf23Q9BZE7 217 aa16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 SLC4A3P48751 1232 aa16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 PPP1R12BO60237 982 aaPredicted RBP16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 RSPH4AQ5TD94 716 aa16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 FERP16591 822 aa16.45■□□□□ 0.22
CCDC88A-201ENST00000263630 FMNL2Q96PY5 1086 aa16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 RRP1P56182 461 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 C6orf163Q5TEZ5 329 aa16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 TICAM2Q86XR7 235 aa16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 ANKRD1Q15327 319 aa16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 MATR3P43243 847 aaKnown RBP eCLIP16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 LUZP1Q86V48 1076 aa16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 DHX37Q8IY37 1157 aaKnown RBP16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 HOMER2Q9NSB8 354 aa16.44■□□□□ 0.22
CCDC88A-201ENST00000263630 ANKRD30AQ9BXX3 1397 aa16.43■□□□□ 0.22
CCDC88A-201ENST00000263630 STK38Q15208 465 aa16.43■□□□□ 0.22
CCDC88A-201ENST00000263630 TRIM22Q8IYM9 498 aa16.43■□□□□ 0.22
CCDC88A-201ENST00000263630 HOOK3Q86VS8 718 aa16.43■□□□□ 0.22
CCDC88A-201ENST00000263630 SPC24Q8NBT2 197 aa16.42■□□□□ 0.22
CCDC88A-201ENST00000263630 KIF2AO00139 706 aaPredicted RBP16.42■□□□□ 0.22
CCDC88A-201ENST00000263630 RNF214Q8ND24 703 aa16.42■□□□□ 0.22
CCDC88A-201ENST00000263630 FKBP5Q13451 457 aaPredicted RBP16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 NEUROD6Q96NK8 337 aa16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 TAOK3Q9H2K8 898 aa16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 SYTL4Q96C24 671 aaPredicted RBP16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 RRP9O43818 475 aaKnown RBP16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 AEBP1Q8IUX7 1158 aa16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 SSR1P43307 286 aaKnown RBP16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 NUP155O75694 1391 aa16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 CDC45O75419 566 aa16.41■□□□□ 0.22
CCDC88A-201ENST00000263630 ZHX3Q9H4I2 956 aa16.4■□□□□ 0.22
CCDC88A-201ENST00000263630 PABPN1LA6NDY0 278 aaKnown RBP16.4■□□□□ 0.22
CCDC88A-201ENST00000263630 TNMDQ9H2S6 317 aa16.4■□□□□ 0.22
CCDC88A-201ENST00000263630 EVC2Q86UK5 1308 aa16.4■□□□□ 0.22
CCDC88A-201ENST00000263630 CCDC57Q2TAC2 916 aa16.4■□□□□ 0.22
CCDC88A-201ENST00000263630 NOL7Q9UMY1 257 aaKnown RBP16.4■□□□□ 0.22
CCDC88A-201ENST00000263630 TRAK2O60296 914 aa16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 PDIA4P13667 645 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 SREK1Q8WXA9 508 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 GNL3LQ9NVN8 582 aaKnown RBP16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.39■□□□□ 0.212e-6■□□□□ 8.9
CCDC88A-201ENST00000263630 CALCOCO1Q9P1Z2 691 aa16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 CCDC113Q9H0I3 377 aa16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 SMTNL1A8MU46 457 aa16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 IFFO1Q0D2I5 559 aa16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 VPS36Q86VN1 386 aa16.39■□□□□ 0.21
CCDC88A-201ENST00000263630 SEPT6Q14141 434 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 CRBNQ96SW2 442 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 RIC3Q7Z5B4 369 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 BCL2L13Q9BXK5 485 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 RRP7AQ9Y3A4 280 aaKnown RBP16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 MPHOSPH10O00566 681 aaKnown RBP16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 SPECC1LQ69YQ0 1117 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 MTMR7Q9Y216 660 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 ERICH4A6NGS2 130 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 CCDC150Q8NCX0 1101 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 GSTTP1A0A1W2PQM5 241 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 CDKL5O76039 1030 aa16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 AEBP2Q6ZN18 517 aaPredicted RBP16.38■□□□□ 0.21
CCDC88A-201ENST00000263630 UQCRHLA0A096LP55 91 aa16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 ELL2O00472 640 aaPredicted RBP16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 UQCRHP07919 91 aa16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 ZBED9Q6R2W3 1325 aa16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 FAM177A1Q8N128 213 aaPredicted RBP16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 COMMD10Q9Y6G5 202 aa16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 WRNQ14191 1432 aaPredicted RBP eCLIP16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 CARMIL2Q6F5E8 1435 aa16.37■□□□□ 0.21
CCDC88A-201ENST00000263630 ARHGAP29Q52LW3 1261 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 SOGA3Q5TF21 947 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 COG6Q9Y2V7 657 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 UBXN4Q92575 508 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 TIGD1Q96MW7 591 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 FERMT1Q9BQL6 677 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 DDX12PQ92771 950 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 FSD1Q9BTV5 496 aa16.36■□□□□ 0.21
CCDC88A-201ENST00000263630 TSNARE1Q96NA8 513 aa16.35■□□□□ 0.21
CCDC88A-201ENST00000263630 RBM10P98175 930 aaKnown RBP16.35■□□□□ 0.21
CCDC88A-201ENST00000263630 UBE4AQ14139 1066 aa16.35■□□□□ 0.21
CCDC88A-201ENST00000263630 CEP57L1Q8IYX8 460 aa16.35■□□□□ 0.21
CCDC88A-201ENST00000263630 SPA17Q15506 151 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms