RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SIK2Q9H0K1 926 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 KCNK9Q9NPC2 374 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 KLHL8Q9P2G9 620 aaPredicted RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 SFMBT1Q9UHJ3 866 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 TMEM120BA0PK00 339 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 TRDMT1O14717 391 aaKnown RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 ADAM12O43184 909 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 FGF18O76093 207 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 APOEP02649 317 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 SRGAP2BP0DMP2 458 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 MYOGP15173 224 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 HOXC13P31276 330 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 GBP2P32456 591 aaPredicted RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 MAGEA3P43357 314 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 MAGEA10P43363 369 aaPredicted RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 GPR15P49685 360 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 NLRP14Q86W24 1093 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 TTC9BQ8N6N2 239 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 PHOSPHO2Q8TCD6 241 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 GPR152Q8TDT2 470 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 SMC6Q96SB8 1091 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 PAFAH2Q99487 392 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 WDR83Q9BRX9 315 aaKnown RBP17.29■□□□□ 0.36
LDLR-206ENST00000557958 NMUR1Q9HB89 426 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 GMIPQ9P107 970 aa17.29■□□□□ 0.36
LDLR-206ENST00000557958 ERI2A8K979 691 aaKnown RBP17.28■□□□□ 0.36
LDLR-206ENST00000557958 MSI1O43347 362 aaKnown RBP17.28■□□□□ 0.36
LDLR-206ENST00000557958 HAPLN1P10915 354 aaPredicted RBP17.28■□□□□ 0.36
LDLR-206ENST00000557958 GCAP28676 217 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 WASHC5Q12768 1159 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 PID1Q7Z2X4 250 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 DDX53Q86TM3 631 aaKnown RBP17.28■□□□□ 0.36
LDLR-206ENST00000557958 TRABD2AQ86V40 505 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 CCNJLQ8IV13 435 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 CNPY4Q8N129 248 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 ZNF567Q8N184 647 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 KLHL23Q8NBE8 558 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 FCRL2Q96LA5 508 aaPredicted RBP17.28■□□□□ 0.36
LDLR-206ENST00000557958 C1orf74Q96LT6 269 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 CDK5RAP1Q96SZ6 601 aaKnown RBP17.28■□□□□ 0.36
LDLR-206ENST00000557958 RASSF4Q9H2L5 321 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 FNIP2Q9P278 1114 aa17.28■□□□□ 0.36
LDLR-206ENST00000557958 SMG5Q9UPR3 1016 aaKnown RBP17.28■□□□□ 0.36
LDLR-206ENST00000557958 TCRBV9S1A1TA0A576 114 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 AVILO75366 819 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 URODP06132 367 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 CTNNB1P35222 781 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 PPM1AP35813 382 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 TBX4P57082 545 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 MTM1Q13496 603 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 SHHQ15465 462 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 ADGRD1Q6QNK2 874 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 LRRC49Q8IUZ0 686 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 TNS4Q8IZW8 715 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 CYP4X1Q8N118 509 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 NPWQ8N729 165 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 CHMP6Q96FZ7 201 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 CFAP36Q96G28 342 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 NAT9Q9BTE0 207 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 CCDC134Q9H6E4 229 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 BACE2Q9Y5Z0 518 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 MAD1L1Q9Y6D9 718 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 MYO16Q9Y6X6 1858 aa17.27■□□□□ 0.36
LDLR-206ENST00000557958 VWA8A3KMH1 1905 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 PLXNA3P51805 1871 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 IQANK1A0A1B0GTG1 560 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 KCNU1A8MYU2 1149 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 EBAG9O00559 213 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 INHBAP08476 426 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 PTPN3P26045 913 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 TUFMP49411 452 aaKnown RBP17.27■□□□□ 0.35
LDLR-206ENST00000557958 KPNA1P52294 538 aaPredicted RBP17.27■□□□□ 0.35
LDLR-206ENST00000557958 DUSP4Q13115 394 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 MANEALQ5VSG8 457 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 SLC8B1Q6J4K2 584 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 LRRC8BQ6P9F7 803 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 SPATS2Q86XZ4 545 aaKnown RBP17.27■□□□□ 0.35
LDLR-206ENST00000557958 ATPAF2Q8N5M1 289 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 ATP6V0D2Q8N8Y2 350 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 ATXN2LQ8WWM7 1075 aaKnown RBP17.27■□□□□ 0.35
LDLR-206ENST00000557958 SGSM3Q96HU1 749 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 CCT8L2Q96SF2 557 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 EBNA1BP2Q99848 306 aaKnown RBP17.27■□□□□ 0.35
LDLR-206ENST00000557958 DHRS4Q9BTZ2 278 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 TRABDQ9H4I3 376 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 ALG13Q9NP73 1137 aaKnown RBP17.27■□□□□ 0.35
LDLR-206ENST00000557958 MTRRQ9UBK8 725 aa17.27■□□□□ 0.35
LDLR-206ENST00000557958 LAMA2P24043 3122 aaKnown RBP17.26■□□□□ 0.35
LDLR-206ENST00000557958 FAM47DPA6NHR8 397 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 KCNK1O00180 336 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 EFEMP2O95967 443 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 MOCS2O96007 188 aaPredicted RBP17.26■□□□□ 0.35
LDLR-206ENST00000557958 PSMB4P28070 264 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 SLC18A1P54219 525 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 USP46P62068 366 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 DSG1Q02413 1049 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 FAM109BQ6ICB4 259 aaPredicted RBP17.26■□□□□ 0.35
LDLR-206ENST00000557958 IGDCC3Q8IVU1 814 aa17.26■□□□□ 0.35
LDLR-206ENST00000557958 RNF168Q8IYW5 571 aaPredicted RBP17.26■□□□□ 0.35
LDLR-206ENST00000557958 PPP1R2P1Q96PQ5 205 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms