RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 DEFB106AQ8N104 65 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 ATP6V0D2Q8N8Y2 350 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 KDM1BQ8NB78 822 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 PTPRN2Q92932 1015 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 RNF34Q969K3 372 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 OMDQ99983 421 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 ORAI3Q9BRQ5 295 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 TRIM62Q9BVG3 475 aa13.73□□□□□ -0.21
CPSF4-210ENST00000469897 APOBEC2Q9Y235 224 aaKnown RBP13.73□□□□□ -0.21
CPSF4-210ENST00000469897 TAF4O00268 1085 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 GRAP2O75791 330 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 IGLV3-25P01717 112 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 ATXN1LP0C7T5 689 aaKnown RBP13.72□□□□□ -0.21
CPSF4-210ENST00000469897 MZF1P28698 734 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-210ENST00000469897 STK19P49842 368 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-210ENST00000469897 CDK17Q00537 523 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 PDCLQ13371 301 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 ARID5BQ14865 1188 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 RNF219Q5W0B1 726 aaPredicted RBP13.72□□□□□ -0.21
CPSF4-210ENST00000469897 GLRX5Q86SX6 157 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 IRF2BP1Q8IU81 584 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 STK40Q8N2I9 435 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 PPP1R13BQ96KQ4 1090 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 FAM81BQ96LP2 452 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 CPXM1Q96SM3 734 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 PRMT1Q99873 361 aaKnown RBP13.72□□□□□ -0.21
CPSF4-210ENST00000469897 EBF2Q9HAK2 575 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 DDIT4Q9NX09 232 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 SCML1Q9UN30 329 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 BTBD3Q9Y2F9 522 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 PCDHGB2Q9Y5G2 931 aa13.72□□□□□ -0.21
CPSF4-210ENST00000469897 NUP205Q92621 2012 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 EDDM13A0A1B0GTR0 161 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 F5H5T6 163 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 H0Y8X5 98 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 CAPNS1P04632 268 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 PDGFRAP16234 1089 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 ABCB4P21439 1286 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 PON1P27169 355 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 GRIA4P48058 902 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 SFSWAPQ12872 951 aaKnown RBP13.71□□□□□ -0.21
CPSF4-210ENST00000469897 EXOC3L4Q17RC7 722 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 EFHC1Q5JVL4 640 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 OR6B2Q6IFH4 312 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 NCEH1Q6PIU2 408 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 CCNI2Q6ZMN8 369 aaPredicted RBP13.71□□□□□ -0.21
CPSF4-210ENST00000469897 ADAT2Q7Z6V5 191 aaKnown RBP13.71□□□□□ -0.21
CPSF4-210ENST00000469897 CCAR2Q8N163 923 aaKnown RBP13.71□□□□□ -0.21
CPSF4-210ENST00000469897 IGSF8Q969P0 613 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 SLC2A13Q96QE2 648 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 CDC6Q99741 560 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 FAM204AQ9H8W3 233 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 APEX2Q9UBZ4 518 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 DNAJC12Q9UKB3 198 aa13.71□□□□□ -0.21
CPSF4-210ENST00000469897 TNRC6BQ9UPQ9 1833 aaKnown RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 A0A1W2PPC4 97 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 LRRC72A6NJI9 287 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 FOXN3O00409 490 aaPredicted RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 WNT9AO14904 365 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 FLRT2O43155 660 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 IL1BP01584 269 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 GLI1P08151 1106 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 VAV1P15498 845 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 GOT1P17174 413 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 CCR1P32246 355 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 KRT9P35527 623 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 NNMTP40261 264 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 CTSKP43235 329 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 MTIF2P46199 727 aaKnown RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 PSMD8P48556 350 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 C21orf59P57076 290 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 RACK1P63244 317 aaKnown RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 IL9RQ01113 521 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 PTK2Q05397 1052 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 SCAPQ12770 1279 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 NME3Q13232 169 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 SLC12A1Q13621 1099 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 FBXL22Q6P050 247 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 C11orf57Q6ZUT1 292 aaPredicted RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 AADATQ8N5Z0 425 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 BAHD1Q8TBE0 780 aaPredicted RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 SHC3Q92529 594 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 SLC6A18Q96N87 628 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 PLCB1Q9NQ66 1216 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 TOR4AQ9NXH8 423 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 AJAP1Q9UKB5 411 aaPredicted RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 PCDHGC3Q9UN70 934 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 PCDH15Q96QU1 1955 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 CACNA1BQ00975 2339 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 FRYQ5TBA9 3013 aa13.7□□□□□ -0.22
CPSF4-210ENST00000469897 MYO18AQ92614 2054 aaKnown RBP13.7□□□□□ -0.22
CPSF4-210ENST00000469897 ITIH6Q6UXX5 1313 aa13.69□□□□□ -0.22
CPSF4-210ENST00000469897 MAP1BP46821 2468 aaKnown RBP13.69□□□□□ -0.22
CPSF4-210ENST00000469897 USP24Q9UPU5 2620 aa13.69□□□□□ -0.22
CPSF4-210ENST00000469897 TBC1D3DA0A087WVF3 549 aa13.69□□□□□ -0.22
CPSF4-210ENST00000469897 TBC1D3IA0A087WXS9 549 aa13.69□□□□□ -0.22
CPSF4-210ENST00000469897 TBC1D3EA0A087X179 549 aa13.69□□□□□ -0.22
CPSF4-210ENST00000469897 TBC1D3KA0A087X1G2 549 aa13.69□□□□□ -0.22
CPSF4-210ENST00000469897 TBC1D3FA6NER0 549 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms