RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 GUCA1CO95843 209 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 POLR2EP19388 210 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 CD9P21926 228 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 IL32P24001 234 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 LRRC74AQ0VAA2 488 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 NME3Q13232 169 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ART3Q13508 389 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 C1orf220Q5T0J3 134 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ACOT1Q86TX2 421 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 NCLNQ969V3 563 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ACO2Q99798 780 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 BTBD10Q9BSF8 475 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 HAUS8Q9BT25 410 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 SPATC1LQ9H0A9 340 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 DHX33Q9H6R0 707 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 APOBEC3GQ9HC16 384 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 NENFQ9UMX5 172 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 FADS3Q9Y5Q0 445 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 AHDC1Q5TGY3 1603 aaPredicted RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 UMODL1Q5DID0 1318 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 CFLARO15519 480 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ONECUT3O60422 494 aaPredicted RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 MAFO75444 373 aaPredicted RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 CSDE1O75534 798 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 MICAL2O94851 1124 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 CCNFP41002 786 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ZBTB41Q5SVQ8 909 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 DRICH1Q6PGQ1 229 aaPredicted RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 RTL10Q7L3V2 364 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ANKS1BQ7Z6G8 1248 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 RASSF3Q86WH2 238 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 SPARTQ8N0X7 666 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 RNF169Q8NCN4 708 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 DDX1Q92499 740 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 APBB2Q92870 758 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 CCDC124Q96CT7 223 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 ZNF560Q96MR9 790 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 TXLNGYQ9BZA5 131 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ASB7Q9H672 318 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 MYH11P35749 1972 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 NPTXRO95502 500 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 PGK2P07205 417 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 TSHRP16473 764 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 MTHFRP42898 656 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 FASTKD3Q14CZ7 662 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 MAPRE1Q15691 268 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 LRRC36Q1X8D7 754 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 TRIM67Q6ZTA4 783 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 RFPL4BQ6ZWI9 263 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 JAZF1Q86VZ6 243 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 MTMR14Q8NCE2 650 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 RAB3IL1Q8TBN0 382 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 DDX50Q9BQ39 737 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 C12orf65Q9H3J6 166 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 PLEKHA5Q9HAU0 1116 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 BTBD7Q9P203 1132 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 EPS15L1Q9UBC2 864 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 NKX1-2Q9UD57 310 aaPredicted RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 CIDEBQ9UHD4 219 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 TSPAN16Q9UKR8 245 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 E7ENQ6 273 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 CPA3P15088 417 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 CDKN2BP42772 138 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ACADSBP45954 432 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 GALK1P51570 392 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 NDST1P52848 882 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 CTAG1AP78358 180 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ACVR2BQ13705 512 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 PARP6Q2NL67 630 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 SLC39A4Q6P5W5 647 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 RGS9BPQ6ZS82 235 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 FASTKD5Q7L8L6 764 aaKnown RBP10.67□□□□□ -0.7
LIG1-220ENST00000601091 OTOAQ7RTW8 1153 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 SPATA24Q86W54 205 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 TDRPQ86YL5 185 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 TTC8Q8TAM2 541 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 SEPT8Q92599 483 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 OMA1Q96E52 524 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 SLC10A4Q96EP9 437 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 ATXN7L3BQ96GX2 97 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 TELO2Q9Y4R8 837 aa10.67□□□□□ -0.7
LIG1-220ENST00000601091 MYH7BA7E2Y1 1941 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 A0A087WZ62 844 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 POM121CA8CG34 1229 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 C2CD2LO14523 706 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 FCHO1O14526 889 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 CLASP2O75122 1294 aaKnown RBP10.66□□□□□ -0.7
LIG1-220ENST00000601091 CRCPO75575 148 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 POLBP06746 335 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 CYP2C8P10632 490 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 TGM2P21980 687 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 SEPHS1P49903 392 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 KPNA2P52292 529 aaKnown RBP10.66□□□□□ -0.7
LIG1-220ENST00000601091 AQP5P55064 265 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 LAMC2Q13753 1193 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 BMPR2Q13873 1038 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 ZNF484Q5JVG2 852 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 TEX19Q8NA77 164 aa10.66□□□□□ -0.7
LIG1-220ENST00000601091 TFB1MQ8WVM0 346 aaKnown RBP10.66□□□□□ -0.7
LIG1-220ENST00000601091 TRAPPC12Q8WVT3 735 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms