RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ADRA1BP35368 520 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 CHKAP35790 457 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 GRIA2P42262 883 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 DGKGP49619 791 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 ZNF143P52747 638 aaPredicted RBP9.53□□□□□ -0.88
VPS35-206ENST00000565228 NR1H3Q13133 447 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 MPPE1Q53F39 396 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 C10orf76Q5T2E6 689 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 GRAMD4Q6IC98 578 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 ALKBH5Q6P6C2 394 aaKnown RBP9.53□□□□□ -0.88
VPS35-206ENST00000565228 RAD9BQ6WBX8 426 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 MAMSTRQ6ZN01 415 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 CHSY1Q86X52 802 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 UNC45BQ8IWX7 931 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 SPEM1Q8N4L4 309 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 FRMD1Q8N878 549 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS35-206ENST00000565228 TXNDC5Q8NBS9 432 aaKnown RBP9.53□□□□□ -0.88
VPS35-206ENST00000565228 VCPIP1Q96JH7 1222 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 BTN2A3PQ96KV6 586 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 MRGPRX3Q96LB0 322 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 HHIPQ96QV1 700 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 PSMB7Q99436 277 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 SIK2Q9H0K1 926 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 NHEJ1Q9H9Q4 299 aaPredicted RBP9.53□□□□□ -0.88
VPS35-206ENST00000565228 OSGEPQ9NPF4 335 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 ABCB8Q9NUT2 735 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 MPP6Q9NZW5 540 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 WDR35Q9P2L0 1181 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 DEC1Q9P2X7 70 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 MRPS17Q9Y2R5 130 aaKnown RBP9.53□□□□□ -0.88
VPS35-206ENST00000565228 STARD13Q9Y3M8 1113 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 ACTL7AQ9Y615 435 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 RAD54BQ9Y620 910 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 R4GN57 208 aa9.53□□□□□ -0.88
VPS35-206ENST00000565228 NYNRINQ9P2P1 1898 aaKnown RBP9.53□□□□□ -0.88
VPS35-206ENST00000565228 SSU72P8A0A1W2PR75 194 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 TBC1D3BA6NDS4 549 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 AKR1B15C9JRZ8 316 aaPredicted RBP9.52□□□□□ -0.89
VPS35-206ENST00000565228 PAPSS2O95340 614 aaPredicted RBP9.52□□□□□ -0.89
VPS35-206ENST00000565228 APODP05090 189 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 CCDC172P0C7W6 258 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 HLA-EP13747 358 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 PRKCHP24723 683 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 SDC4P31431 198 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 GBP1P32455 592 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 IL12RB1P42701 662 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 TNFRSF4P43489 277 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 SLC11A2P49281 568 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 FNTBP49356 437 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 CSTF1Q05048 431 aaKnown RBP9.52□□□□□ -0.89
VPS35-206ENST00000565228 SEMA3BQ13214 749 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 ENPP2Q13822 863 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 TRIM14Q14142 442 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 SLC18A3Q16572 532 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 CCDC122Q5T0U0 273 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 STRADAQ7RTN6 431 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 NLRP14Q86W24 1093 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 DRC7Q8IY82 874 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 CCAR2Q8N163 923 aaKnown RBP9.52□□□□□ -0.89
VPS35-206ENST00000565228 CARNMT1Q8N4J0 409 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 ZNF366Q8N895 744 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 ATP6V0D2Q8N8Y2 350 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 NETO2Q8NC67 525 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 FIBINQ8TAL6 211 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 VOPP1Q96AW1 172 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 IQCDQ96DY2 449 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 KCNH6Q9H252 994 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 NOL6Q9H6R4 1146 aaKnown RBP9.52□□□□□ -0.89
VPS35-206ENST00000565228 WDCPQ9H6R7 721 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 CACNA2D2Q9NY47 1150 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 RRN3Q9NYV6 651 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 SALL4Q9UJQ4 1053 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 FZD10Q9ULW2 581 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 STAP1Q9ULZ2 295 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 MFHAS1Q9Y4C4 1052 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 GON4LQ3T8J9 2241 aa9.52□□□□□ -0.89
VPS35-206ENST00000565228 OTOGLQ3ZCN5 2332 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 SPAG17Q6Q759 2223 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 A0A0D9SEW6 157 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 SOWAHDA6NJG2 315 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 E9PAM4 449 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 HRO43593 1189 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 LILRB5O75023 590 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 LRCH4O75427 683 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 LRIG2O94898 1065 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 LUC7L3O95232 432 aaKnown RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 APOEP02649 317 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 PABPC1P11940 636 aaKnown RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 GLDCP23378 1020 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 MIPP30301 263 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 CSKP41240 450 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 CXCL12P48061 93 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 STK19P49842 368 aaPredicted RBP9.51□□□□□ -0.89
VPS35-206ENST00000565228 SNX16P57768 344 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 TAS2R40P59535 323 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 LRRC32Q14392 662 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 DMC1Q14565 340 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 ATP13A4Q4VNC1 1196 aa9.51□□□□□ -0.89
VPS35-206ENST00000565228 BRMS1LQ5PSV4 323 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms