RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	MYO19	Q96H55	970 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	SERAC1	Q96JX3	654 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	USP28	Q96RU2	1077 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	OMD	Q99983	421 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	DPH1	Q9BZG8	443 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	EBF2	Q9HAK2	575 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	SLC39A2	Q9NP94	309 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	SERGEF	Q9UGK8	458 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079	MYO18B	Q8IUG5	2567 aa		12.93	□□□□□ -0.34
CAPN1-223	ENST00000533079		A0A1W2PP55	124 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	TARSL2	A2RTX5	802 aa	Known RBP	12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	TYW5	A2RUC4	315 aa	Known RBP	12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	MAPK13	O15264	365 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	ARHGAP6	O43182	974 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	LAT	O43561	262 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	SIN3B	O75182	1162 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	RNASEH2A	O75792	299 aa	Known RBP	12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	ZBED1	O96006	694 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	ADH1B	P00325	375 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	ADPRH	P54922	357 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	KCNC4	Q03721	635 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	ENPEP	Q07075	957 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	PROX2	Q3B8N5	592 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	HS1BP3	Q53T59	392 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	PIGZ	Q86VD9	579 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	FAM181A	Q8N9Y4	354 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	MFSD2A	Q8NA29	543 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	RNF139	Q8WU17	664 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	TTC17	Q96AE7	1141 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	SCAND2P	Q9GZW5	306 aa	Predicted RBP	12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	NEUROG2	Q9H2A3	272 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	KDM4C	Q9H3R0	1056 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	FRMD4B	Q9Y2L6	1034 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	MYLK	Q15746	1914 aa		12.92	□□□□□ -0.34
CAPN1-223	ENST00000533079	ITIH6	Q6UXX5	1313 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	PDXK	O00764	312 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	MID1	O15344	667 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	SRPRA	P08240	638 aa	Known RBP	12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	GOT1	P17174	413 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	CD58	P19256	250 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	C5AR1	P21730	350 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	CD70	P32970	193 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	TKTL1	P51854	596 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	KRT85	P78386	507 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	ZNF211	Q13398	564 aa	Predicted RBP	12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	KCNJ12	Q14500	433 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	STK38	Q15208	465 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	PRAMEF14	Q5SWL7	426 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	FOXD4L5	Q5VV16	416 aa	Predicted RBP	12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	NUGGC	Q68CJ6	796 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	ARHGAP17	Q68EM7	881 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	FAM173B	Q6P4H8	233 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	IGF2-AS	Q6U949	168 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	BHLHA9	Q7RTU4	235 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	MFN1	Q8IWA4	741 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	LINC00301	Q8NCQ3	95 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	KCNE4	Q8WWG9	221 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	TTC9	Q92623	222 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	DEPDC7	Q96QD5	511 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	APOBEC3G	Q9HC16	384 aa	Known RBP	12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	ABCC13	Q9NSE7	274 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	CFAP45	Q9UL16	551 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	DMTF1	Q9Y222	760 aa		12.91	□□□□□ -0.34
CAPN1-223	ENST00000533079	GOLGA4	Q13439	2230 aa	Known RBP	12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	EDDM13	A0A1B0GTR0	161 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	XPO1	O14980	1071 aa	Known RBP	12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	SPTLC2	O15270	562 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	WISP1	O95388	367 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	MT-CO3	P00414	261 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	NR3C1	P04150	777 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	SLC8A1	P32418	973 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	SLC11A2	P49281	568 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	UBE2H	P62256	183 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	BNIP3	Q12983	259 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	NUMA1	Q14980	2115 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	KMT5B	Q4FZB7	885 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	PIK3R6	Q5UE93	754 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	KDM7A	Q6ZMT4	941 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	INTS8	Q75QN2	995 aa	Known RBP	12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	MMAA	Q8IVH4	418 aa	Known RBP	12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	UNC45B	Q8IWX7	931 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	SCML4	Q8N228	414 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	ANKRD52	Q8NB46	1076 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	HJURP	Q8NCD3	748 aa	Predicted RBP	12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	FIBIN	Q8TAL6	211 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	WFDC5	Q8TCV5	224 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	FAM131C	Q96AQ9	280 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	MED8	Q96G25	268 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	HEXIM2	Q96MH2	286 aa	Known RBP	12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	KCTD10	Q9H3F6	313 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	THSD1	Q9NS62	852 aa		12.9	□□□□□ -0.34
CAPN1-223	ENST00000533079	CYSRT1	A8MQ03	144 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	RIOK3	O14730	519 aa	Known RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	SLC7A4	O43246	635 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	LZTS3	O60299	673 aa	Predicted RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	CUTA	O60888	179 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBL1X	O60907	577 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	IGLV3-27	P01718	113 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	GP1BA	P07359	652 aa		12.89	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms