RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ATP13A4Q4VNC1 1196 aa15.43■□□□□ 0.06
NUP54-213ENST00000513352 IER5LQ5T953 404 aa15.43■□□□□ 0.06
NUP54-213ENST00000513352 NAIF1Q69YI7 327 aaPredicted RBP15.43■□□□□ 0.06
NUP54-213ENST00000513352 C12orf40Q86WS4 652 aa15.43■□□□□ 0.06
NUP54-213ENST00000513352 MFN1Q8IWA4 741 aa15.43■□□□□ 0.06
NUP54-213ENST00000513352 LRRC57Q8N9N7 239 aa15.43■□□□□ 0.06
NUP54-213ENST00000513352 CALN1Q9BXU9 219 aa15.43■□□□□ 0.06
NUP54-213ENST00000513352 AMFRQ9UKV5 643 aa15.43■□□□□ 0.06
NUP54-213ENST00000513352 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.43■□□□□ 0.06
NUP54-213ENST00000513352 DOCK4Q8N1I0 1966 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 A0A1B0GVM2 712 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 LRRD1A4D1F6 860 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 TCAF2A6NFQ2 919 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 USP27XA6NNY8 438 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 PI4K2BG5E9Z4 385 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 GFRA2O00451 464 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 PSTPIP1O43586 416 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 CACNG3O60359 315 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 TULP3O75386 442 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 CNTN5O94779 1100 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 LUC7L3O95232 432 aaKnown RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 SLC34A2O95436 690 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 SLC6A11P48066 632 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 DGKGP49619 791 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 NRG1Q02297 640 aaPredicted RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 ZNF177Q13360 481 aaPredicted RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 PON2Q15165 354 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 MPP7Q5T2T1 576 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 GRAMD4Q6IC98 578 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 POLNQ7Z5Q5 900 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 RALGPS2Q86X27 583 aaPredicted RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 REXO1L1PQ8IX06 675 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 ZNF683Q8IZ20 524 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 CCAR2Q8N163 923 aaKnown RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 FAM3CQ92520 227 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 CD101Q93033 1021 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 EXOC4Q96A65 974 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 CHFRQ96EP1 664 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 MSANTD3Q96H12 275 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 IRX2Q9BZI1 471 aaPredicted RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 ZYG11BQ9C0D3 744 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 PCDH18Q9HCL0 1135 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 DDX56Q9NY93 547 aaKnown RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 DEC1Q9P2X7 70 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 WNT16Q9UBV4 365 aa15.42■□□□□ 0.06
NUP54-213ENST00000513352 NDRG2Q9UN36 371 aaKnown RBP15.42■□□□□ 0.06
NUP54-213ENST00000513352 KIAA1549LQ6ZVL6 1849 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.41■□□□□ 0.06
NUP54-213ENST00000513352 CLDN11O75508 207 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 GLULP15104 373 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 GOT1P17174 413 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 CD72P21854 359 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 OPRD1P41143 372 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 CDH4P55283 916 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 DPYSL2Q16555 572 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 GAB4Q2WGN9 574 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 ALFQ53S48 1182 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 MANEALQ5VSG8 457 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 LRRC38Q5VT99 294 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 TXNDC11Q6PKC3 985 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 CCDC50Q8IVM0 306 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 MAP7D3Q8IWC1 876 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 TRIM58Q8NG06 486 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 KRT35Q92764 455 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 P2RY11Q96G91 374 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 SHDQ96IW2 340 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 P2RY13Q9BPV8 354 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 MFSD1Q9H3U5 465 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 CATSPERBQ9H7T0 1116 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 ARHGEF4Q9NR80 690 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 ABCB8Q9NUT2 735 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 PPARGC1AQ9UBK2 798 aaKnown RBP15.41■□□□□ 0.06
NUP54-213ENST00000513352 CLEC4EQ9ULY5 219 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 PACSIN2Q9UNF0 486 aaPredicted RBP15.41■□□□□ 0.06
NUP54-213ENST00000513352 F5P12259 2224 aa15.41■□□□□ 0.06
NUP54-213ENST00000513352 IGLV3-10A0A075B6K4 115 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 KRBA1A5PL33 1030 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 GOLGA6L9A6NEM1 432 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 DRGXA6NNA5 263 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 MAN2B1O00754 1011 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 TRIM24O15164 1050 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 FGF10O15520 208 aaPredicted RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 KIF5CO60282 957 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 APODP05090 189 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 RHOCP08134 193 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 CD48P09326 243 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 ALADP13716 330 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 RHOQP17081 205 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 OR1E1P30953 314 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 HTR7P34969 479 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 CTNNA1P35221 906 aaKnown RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 MARCKSL1P49006 195 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 NUMBP49757 651 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 ZNF135P52742 658 aaPredicted RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 PRKCQQ04759 706 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 MMRN1Q13201 1228 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 SEMA3BQ13214 749 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 UBXN2BQ14CS0 331 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 PDK2Q15119 407 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms