RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ASB7Q9H672 318 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 HMG20AQ9NP66 347 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 PCDHA2Q9Y5H9 948 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 ADCY6O43306 1168 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 LYPLA1O75608 230 aaPredicted RBP19.72■□□□□ 0.75
USP48-201ENST00000308271 CHRNB2P17787 502 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 ATP6V1B2P21281 511 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 CLCN3P51790 818 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 CYP51A1Q16850 503 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 OTUD3Q5T2D3 398 aaPredicted RBP19.72■□□□□ 0.75
USP48-201ENST00000308271 NKX1-2Q9UD57 310 aaPredicted RBP19.72■□□□□ 0.75
USP48-201ENST00000308271 VPS9D1Q9Y2B5 631 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 TBX10O75333 385 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 FNIP1Q8TF40 1166 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 SLC4A5Q9BY07 1137 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 TMEM134Q9H6X4 195 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 UBIAD1Q9Y5Z9 338 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 FMN2Q9NZ56 1722 aa19.72■□□□□ 0.75
USP48-201ENST00000308271 ERI2A8K979 691 aaKnown RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 GTF2H3Q13889 308 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 FAM98BQ52LJ0 330 aaKnown RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 BANPQ8N9N5 519 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 MAN1C1Q9NR34 630 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 CDH22Q9UJ99 828 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 RAB26Q9ULW5 256 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 LRPAP1P30533 357 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 RGS21Q2M5E4 152 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 ATP6AP1LQ52LC2 224 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 URGCPQ8TCY9 931 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 AFG1LQ8WV93 481 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 SEPHS2Q99611 448 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 PORCNQ9H237 461 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 ZNF556Q9HAH1 456 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 PTTG2Q9NZH5 202 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 BAIAP3O94812 1187 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 CSPG5O95196 566 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 FGFR3P22607 806 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 PIK3R1P27986 724 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 RTP1P59025 263 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 ZNF554Q86TJ5 538 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 SEC14L1Q92503 715 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 RCN3Q96D15 328 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 SHISA4Q96DD7 197 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 C12orf65Q9H3J6 166 aaKnown RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 TJP2Q9UDY2 1190 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 ZNF180Q9UJW8 692 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 PLA2G4CQ9UP65 541 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 SNCAIPQ9Y6H5 919 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 RICTORQ6R327 1708 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 KCNK1O00180 336 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 AVILO75366 819 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 C15orf59Q2T9L4 293 aaPredicted RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 TIGD7Q6NT04 549 aaPredicted RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 NOTUMQ6P988 496 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 PHF21BQ96EK2 531 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 CLK4Q9HAZ1 481 aaKnown RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 EXOSC4Q9NPD3 245 aaKnown RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 OLA1Q9NTK5 396 aaKnown RBP19.71■□□□□ 0.75
USP48-201ENST00000308271 PIM2Q9P1W9 311 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 RNF112Q9ULX5 631 aa19.71■□□□□ 0.75
USP48-201ENST00000308271 HIRAP54198 1017 aaPredicted RBP19.7■□□□□ 0.74
USP48-201ENST00000308271 SPOUT1Q5T280 376 aaKnown RBP19.7■□□□□ 0.74
USP48-201ENST00000308271 STYK1Q6J9G0 422 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 TAGAPQ8N103 731 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 VPS33AQ96AX1 596 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 FICDQ9BVA6 458 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 ST6GALNAC4Q9H4F1 302 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 PNPOQ9NVS9 261 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 COMMD8Q9NX08 183 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 ITGB5P18084 799 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 CDKN2BP42772 138 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 KLF10Q13118 480 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 AMHR2Q16671 573 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 HPS6Q86YV9 775 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 C10orf107Q8IVU9 208 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 SCUBE3Q8IX30 993 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 APBA2Q99767 749 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 SH3GL1Q99961 368 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 ACKR2O00590 384 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 TPH1P17752 444 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 RGS4P49798 205 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 RAD51Q06609 339 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 CDC16Q13042 620 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 METTL21CQ5VZV1 264 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 PPP1R10Q96QC0 940 aaKnown RBP19.7■□□□□ 0.74
USP48-201ENST00000308271 ZNF670Q9BS34 389 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 PRKD2Q9BZL6 878 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 UBP1Q9NZI7 540 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 EIF3LQ9Y262 564 aaKnown RBP19.7■□□□□ 0.74
USP48-201ENST00000308271 SLC30A1Q9Y6M5 507 aa19.7■□□□□ 0.74
USP48-201ENST00000308271 TRAFD1O14545 582 aaPredicted RBP19.69■□□□□ 0.74
USP48-201ENST00000308271 TRMUO75648 421 aaKnown RBP19.69■□□□□ 0.74
USP48-201ENST00000308271 FBXO21O94952 628 aa19.69■□□□□ 0.74
USP48-201ENST00000308271 MYL3P08590 195 aa19.69■□□□□ 0.74
USP48-201ENST00000308271 ACTR3P61158 418 aa19.69■□□□□ 0.74
USP48-201ENST00000308271 FNBP1LQ5T0N5 605 aa19.69■□□□□ 0.74
USP48-201ENST00000308271 VAT1Q99536 393 aa19.69■□□□□ 0.74
USP48-201ENST00000308271 SPATA16Q9BXB7 569 aa19.69■□□□□ 0.74
USP48-201ENST00000308271 CDH19Q9H159 772 aa19.69■□□□□ 0.74
USP48-201ENST00000308271 SYTL2Q9HCH5 934 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms