RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 A0A1W2PQJ5 194 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 HOXB6P17509 224 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 MNDAP41218 407 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC34A1Q06495 639 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 PLD1Q13393 1074 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 OR56A4Q8NGH8 313 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 MRPS31Q92665 395 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 THG1LQ9NWX6 298 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 GAS2O43903 313 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 GSSP48637 474 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 TAF5Q15542 800 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 POC5Q8NA72 575 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 PABPC3Q9H361 631 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 NDOR1Q9UHB4 597 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 CDH7Q9ULB5 785 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 CLASP1Q7Z460 1538 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L15C9J2P7 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L13C9JLJ4 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L11C9JVI0 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L18D6R9N7 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L22D6RA61 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L17D6RBQ6 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L19D6RCP7 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L20D6RJB6 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L24Q0WX57 530 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 USP17L6PQ6QN14 398 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 TRMT11Q7Z4G4 463 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 ARMC8Q8IUR7 673 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 ZIM3Q96PE6 472 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 CYP4F12Q9HCS2 524 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 RSL1D1O76021 490 aaKnown RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 S100A12P80511 92 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 BMT2Q1RMZ1 405 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 NAIF1Q69YI7 327 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 DENND5BQ6ZUT9 1274 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 LRRC70Q7Z2Q7 622 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 RRN3Q9NYV6 651 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 VANGL2Q9ULK5 521 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 SNAP91O60641 907 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 HKDC1Q2TB90 917 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 PRMT7Q9NVM4 692 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 SLFN11Q7Z7L1 901 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 AP1G2O75843 785 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 OR56A5P0C7T3 313 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 CDH3P22223 829 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 GRTP1Q5TC63 336 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 GPAT2Q6NUI2 795 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF615Q8N8J6 731 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 PCDH8O95206 1070 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 UCHL3P15374 230 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 PHKG2P15735 406 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 MAPK9P45984 424 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 LRRC69Q6ZNQ3 347 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 ATCAYQ86WG3 371 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 ZFP28Q8NHY6 868 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 SYN2Q92777 582 aaPredicted RBP14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 DNAJC16Q9Y2G8 782 aa14.2□□□□□ -0.14
CCDC88A-201ENST00000263630 PLOD2O00469 737 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 SASH1O94885 1247 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 RIPK1Q13546 671 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 FAM196AQ6ZSG2 479 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 PANX3Q96QZ0 392 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 TRIM38O00635 465 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 RPLP2P05387 115 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ADSLP30566 484 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ACOT2P49753 483 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 GRM4Q14833 912 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 USP38Q8NB14 1042 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 DHRS7Q9Y394 339 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CFAP74Q9C0B2 1584 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 NEK3P51956 506 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CDH4P55283 916 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 NAA20P61599 178 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 TBC1D25Q3MII6 688 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 TMEM168Q9H0V1 697 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 RAPGEFL1Q9UHV5 662 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 GNPTGQ9UJJ9 305 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ERVV-1B6SEH8 477 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 SEC22BO75396 215 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 TXNP10599 105 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 COMTP21964 271 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CLK2P49760 499 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 TYSND1Q2T9J0 566 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ATF7IP2Q5U623 682 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 PTCD2Q8WV60 388 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 RRN3P2A6NIE6 340 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF208O43345 1280 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CPA3P15088 417 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 FGFR2P21802 821 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 MTDHQ86UE4 582 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 TMEM169Q96HH4 297 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 NMRAL1Q9HBL8 299 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 IKZF3Q9UKT9 509 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 R3HDM2Q9Y2K5 976 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 MFHAS1Q9Y4C4 1052 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 AXIN1O15169 862 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CCNT2O60583 730 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CKBP12277 381 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CAV3P56539 151 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 MPP3Q13368 585 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms