RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 MTMR4Q9NYA4 1195 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ZNHIT2Q9UHR6 403 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 RRN3P2A6NIE6 340 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 PRRT4C9JH25 899 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 TMEM232C9JQI7 657 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 EYA2O00167 538 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 GRM8O00222 908 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 CNTN5O94779 1100 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ENO1P06733 434 aaKnown RBP4.97□□□□□ -1.61
CCDC54-201ENST00000261058 SLC3A2P08195 630 aaKnown RBP4.97□□□□□ -1.61
CCDC54-201ENST00000261058 CSF1P09603 554 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ACP5P13686 325 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 PNPLA4P41247 253 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 SOX2P48431 317 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 PCP4P48539 62 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 RBM5P52756 815 aaKnown RBP eCLIP4.97□□□□□ -1.61
CCDC54-201ENST00000261058 UBE3AQ05086 875 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 KPNB1Q14974 876 aaKnown RBP4.97□□□□□ -1.61
CCDC54-201ENST00000261058 CERKLQ49MI3 558 aaPredicted RBP4.97□□□□□ -1.61
CCDC54-201ENST00000261058 STRIP1Q5VSL9 837 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ZNF813Q6ZN06 617 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ZNF788Q6ZQV5 615 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ENDOVQ8N8Q3 282 aaKnown RBP4.97□□□□□ -1.61
CCDC54-201ENST00000261058 FSIP1Q8NA03 581 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 CEP70Q8NHQ1 597 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 CELF1Q92879 486 aaKnown RBP4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ARRDC3Q96B67 414 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 SFXN1Q9H9B4 322 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 NOD2Q9HC29 1040 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 PDE11AQ9HCR9 933 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ERVK-5Q9HDB9 667 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 TXNRD2Q9NNW7 524 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 ZNF69Q9UC07 566 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 MAFFQ9ULX9 164 aa4.97□□□□□ -1.61
CCDC54-201ENST00000261058 VWA3AA6NCI4 1184 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 STX16-NPEPL1H3BU86 382 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 SMIM22K7EJ46 135 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 STX16O14662 325 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 HOXC11O43248 304 aaPredicted RBP4.96□□□□□ -1.62
CCDC54-201ENST00000261058 PYGLP06737 847 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 RXRAP19793 462 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 TGM2P21980 687 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 VAMP2P63027 116 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 KRTAP1-1Q07627 177 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 THOC5Q13769 683 aaKnown RBP4.96□□□□□ -1.62
CCDC54-201ENST00000261058 SEMA3AQ14563 771 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 ANKRD1Q15327 319 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 TAF12Q16514 161 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 LRRC24Q50LG9 513 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 PTF1AQ7RTS3 328 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 PNLDC1Q8NA58 520 aaKnown RBP4.96□□□□□ -1.62
CCDC54-201ENST00000261058 OR52N4Q8NGI2 321 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 REEP2Q9BRK0 252 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 RIOX1Q9H6W3 641 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 MLXIPLQ9NP71 852 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 WASH6PQ9NQA3 447 aa4.96□□□□□ -1.62
CCDC54-201ENST00000261058 HEMK1Q9Y5R4 338 aaPredicted RBP4.96□□□□□ -1.62
CCDC54-201ENST00000261058 HMGB1P1B2RPK0 211 aaPredicted RBP4.95□□□□□ -1.62
CCDC54-201ENST00000261058 NUDT3O95989 172 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 BMP5P22003 454 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 PRPH2P23942 346 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 VPS41P49754 854 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 ADPRHP54922 357 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 SHC2P98077 582 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 B4GALNT1Q00973 533 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 CDK18Q07002 472 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 CBWD5Q5RIA9 395 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 ZNF782Q6ZMW2 699 aaPredicted RBP4.95□□□□□ -1.62
CCDC54-201ENST00000261058 MMS22LQ6ZRQ5 1243 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 MDGA2Q7Z553 956 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 ADGRG3Q86Y34 549 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 PAQR4Q8N4S7 273 aaPredicted RBP4.95□□□□□ -1.62
CCDC54-201ENST00000261058 ZFPM2Q8WW38 1151 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 IGFBPL1Q8WX77 278 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 DPF1Q92782 380 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 NELL1Q92832 810 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 MAELQ96JY0 434 aaKnown RBP4.95□□□□□ -1.62
CCDC54-201ENST00000261058 TM2D2Q9BX73 214 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 RMI1Q9H9A7 625 aa4.95□□□□□ -1.62
CCDC54-201ENST00000261058 RRP7AQ9Y3A4 280 aaKnown RBP4.95□□□□□ -1.62
CCDC54-201ENST00000261058 EMSYQ7Z589 1322 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 NPIPB13A6NJU9 1138 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 NPIPB5A8MRT5 1133 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 NPIPB4C9JG80 1138 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 TSPAN3O60637 253 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 PRKCGP05129 697 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 POLBP06746 335 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 ALDOCP09972 364 aaKnown RBP4.94□□□□□ -1.62
CCDC54-201ENST00000261058 PFKFB3Q16875 520 aaPredicted RBP4.94□□□□□ -1.62
CCDC54-201ENST00000261058 INTS11Q5TA45 600 aaKnown RBP4.94□□□□□ -1.62
CCDC54-201ENST00000261058 MEX3CQ5U5Q3 659 aaKnown RBP4.94□□□□□ -1.62
CCDC54-201ENST00000261058 ANO7Q6IWH7 933 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 DENND1BQ6P3S1 775 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 ZNF66Q6ZN08 573 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 RBM44Q6ZP01 1051 aaKnown RBP4.94□□□□□ -1.62
CCDC54-201ENST00000261058 RD3Q7Z3Z2 195 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 RHPN2Q8IUC4 686 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 LINS1Q8NG48 757 aa4.94□□□□□ -1.62
CCDC54-201ENST00000261058 ZNF764Q96H86 408 aaPredicted RBP4.94□□□□□ -1.62
CCDC54-201ENST00000261058 PPP1R10Q96QC0 940 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms