RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 NR3C1P04150 777 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 HOXB1P14653 301 aaPredicted RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 NDUFA8P51970 172 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 IL9RQ01113 521 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CAMK2BQ13554 666 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CUL4BQ13620 913 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 SMAD1Q15797 465 aaKnown RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 TTC31Q49AM3 519 aaPredicted RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 ZNF394Q53GI3 561 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 PPP1R26Q5T8A7 1209 aaPredicted RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 TMEM215Q68D42 235 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 SLC9A9Q8IVB4 645 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 ZNF276Q8N554 614 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 ZNF366Q8N895 744 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 BIRC7Q96CA5 298 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CRELD1Q96HD1 420 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 BPIFA3Q9BQP9 254 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 DUSP16Q9BY84 665 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 SLC2A11Q9BYW1 496 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 TM9SF3Q9HD45 589 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 EXOC1Q9NV70 894 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 ANO10Q9NW15 660 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 FTSJ1Q9UET6 329 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 USP3Q9Y6I4 520 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 SHROOM3Q8TF72 1996 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 DNTTP04053 509 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 HNF1BP35680 557 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 HARS2P49590 506 aaKnown RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 BCAT1P54687 386 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 SLC8A3P57103 927 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CAMK2GQ13555 558 aaPredicted RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 CEP57L1Q8IYX8 460 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 ARHGAP18Q8N392 663 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CPXM2Q8N436 756 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CCDC150Q8NCX0 1101 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 PIP4K2CQ8TBX8 421 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CYB5D2Q8WUJ1 264 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 ANKRD7Q92527 254 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 HEXIM2Q96MH2 286 aaKnown RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 ARID3AQ99856 593 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 ACE2Q9BYF1 805 aaPredicted RBP8.17□□□□□ -1.1
CLK1-215ENST00000621181 NIF3L1Q9GZT8 377 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 CYP3A43Q9HB55 503 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 DMAC2Q9NW81 257 aa8.17□□□□□ -1.1
CLK1-215ENST00000621181 FAM47DPA6NHR8 397 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 H0Y8X5 98 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 PLK4O00444 970 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 DFNA5O60443 496 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 ZIC2O95409 532 aaPredicted RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 CMA1P23946 247 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 CD27P26842 260 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 HOXD9P28356 352 aaPredicted RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 HLA-FP30511 346 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 ME1P48163 572 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 GCLMP48507 274 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 VAMP7P51809 220 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 EMP3P54852 163 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 C21orf59P57076 290 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 YWHAGP61981 247 aaKnown RBP eCLIP8.16□□□□□ -1.1
CLK1-215ENST00000621181 CCZ1BP86790 482 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 CCZ1P86791 482 aaPredicted RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 ZBTB16Q05516 673 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 C19orf57Q0VDD7 668 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 STK4Q13043 487 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 ARID5BQ14865 1188 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 NCAPHQ15003 741 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 MPPE1Q53F39 396 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 DNTTIP2Q5QJE6 756 aaKnown RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 C6orf118Q5T5N4 469 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 CHST9Q7L1S5 443 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 TMPRSS12Q86WS5 348 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 LRRC8AQ8IWT6 810 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 GRAMD1CQ8IYS0 662 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 RBBP8NLQ8NC74 664 aaPredicted RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 KIAA0895Q8NCT3 520 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 GANCQ8TET4 914 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 PTCD2Q8WV60 388 aaKnown RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 PLD4Q96BZ4 506 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 NXPE2Q96DL1 559 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 UBL7Q96S82 380 aaPredicted RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 TMEM245Q9H330 911 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 MMRN2Q9H8L6 949 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 FBRSQ9HAH7 460 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 APOBEC3GQ9HC16 384 aaKnown RBP8.16□□□□□ -1.1
CLK1-215ENST00000621181 OSGEPQ9NPF4 335 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 ABCB8Q9NUT2 735 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 KIAA1468Q9P260 1216 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 HPSEQ9Y251 543 aa8.16□□□□□ -1.1
CLK1-215ENST00000621181 A0A1B0GVL5 298 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 E9PAM4 449 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 PDXKO00764 312 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 TSPAN3O60637 253 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 PRB1P04280 392 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 ATP5BP06576 529 aaKnown RBP8.15□□□□□ -1.1
CLK1-215ENST00000621181 TRIM49P0CI25 452 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 TRIM49CP0CI26 452 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 JUPP14923 745 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 ABCB4P21439 1286 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 TKTL1P51854 596 aa8.15□□□□□ -1.1
CLK1-215ENST00000621181 SEMG2Q02383 582 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms