RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DGKEP52429 567 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 PTP4A2Q12974 167 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 CDO1Q16878 200 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 OTUD1Q5VV17 481 aaPredicted RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 PKN3Q6P5Z2 889 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 DCUN1D2Q6PH85 259 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 TSSK4Q6SA08 328 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 STRADAQ7RTN6 431 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 ZNF571Q7Z3V5 609 aaPredicted RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 LONP2Q86WA8 852 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 CNGA4Q8IV77 575 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 CHPFQ8IZ52 775 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 MCOLN2Q8IZK6 566 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 EMC1Q8N766 993 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 IL17RCQ8NAC3 791 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 TSTD1Q8NFU3 115 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 RPRD1AQ96P16 312 aaPredicted RBP13.44□□□□□ -0.26
CLK3-224ENST00000568605 MCEEQ96PE7 176 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.44□□□□□ -0.26
CLK3-224ENST00000568605 TKTL2Q9H0I9 626 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 PARVAQ9NVD7 372 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 ARHGEF38Q9NXL2 777 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 STIM2Q9P246 746 aa13.44□□□□□ -0.26
CLK3-224ENST00000568605 GOLGA6L7A0A1B0GV03 622 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 SIGLEC16A6NMB1 481 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 K7ESF4 209 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 TRIM24O15164 1050 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 TIMM44O43615 452 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 PAGE1O75459 146 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 MOCS3O95396 460 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 CISD3P0C7P0 127 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 PABPC1P11940 636 aaKnown RBP13.43□□□□□ -0.26
CLK3-224ENST00000568605 SKILP12757 684 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 TDGF1P13385 188 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 HOXB2P14652 356 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 NTSR1P30989 418 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 CNR2P34972 360 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 SGSHP51688 502 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 OXCT1P55809 520 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 ATP11AP98196 1134 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 MESP2Q0VG99 397 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 STARD3Q14849 445 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 CRY1Q16526 586 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 RNF43Q68DV7 783 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 LRRC31Q6UY01 552 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 PHLDB2Q86SQ0 1253 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 DRC7Q8IY82 874 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 CARNMT1Q8N4J0 409 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 CCDC33Q8N5R6 958 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.43□□□□□ -0.26
CLK3-224ENST00000568605 TXNDC5Q8NBS9 432 aaKnown RBP13.43□□□□□ -0.26
CLK3-224ENST00000568605 ZBTB44Q8NCP5 570 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 RXFP2Q8WXD0 754 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 NELL1Q92832 810 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 NKD2Q969F2 451 aaPredicted RBP13.43□□□□□ -0.26
CLK3-224ENST00000568605 ZNF653Q96CK0 615 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 HHIPQ96QV1 700 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 PPP1R9BQ96SB3 815 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 CIPCQ9C0C6 399 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 DEF6Q9H4E7 631 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 MRPL47Q9HD33 250 aaKnown RBP13.43□□□□□ -0.26
CLK3-224ENST00000568605 ABCB8Q9NUT2 735 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 XPO7Q9UIA9 1087 aaKnown RBP13.43□□□□□ -0.26
CLK3-224ENST00000568605 GGA2Q9UJY4 613 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 VANGL2Q9ULK5 521 aa13.43□□□□□ -0.26
CLK3-224ENST00000568605 SHROOM3Q8TF72 1996 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 PRRT4C9JH25 899 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 PROB1E7EW31 1015 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 H0Y626 953 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 ENDOD1O94919 500 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 ATP5BP06576 529 aaKnown RBP13.42□□□□□ -0.26
CLK3-224ENST00000568605 RRM1P23921 792 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 HLA-FP30511 346 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 RPS24P62847 133 aaKnown RBP13.42□□□□□ -0.26
CLK3-224ENST00000568605 AUHQ13825 339 aaKnown RBP13.42□□□□□ -0.26
CLK3-224ENST00000568605 GEN1Q17RS7 908 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 EGFLAMQ63HQ2 1017 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 HGSNATQ68CP4 663 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 TRNP1Q6NT89 227 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 CHST9Q7L1S5 443 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 BNIPLQ7Z465 357 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 FAM131BQ86XD5 332 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 SFTPA1Q8IWL2 248 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 OR8K1Q8NGG5 319 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 JOSD2Q8TAC2 188 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 FIBINQ8TAL6 211 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 FAM172AQ8WUF8 416 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 PRMT1Q99873 361 aaKnown RBP13.42□□□□□ -0.26
CLK3-224ENST00000568605 SIK2Q9H0K1 926 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 KIAA1522Q9P206 1035 aaPredicted RBP13.42□□□□□ -0.26
CLK3-224ENST00000568605 CNOT8Q9UFF9 292 aaKnown RBP13.42□□□□□ -0.26
CLK3-224ENST00000568605 HS3ST4Q9Y661 456 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 ANKRD36A6QL64 1941 aa13.42□□□□□ -0.26
CLK3-224ENST00000568605 SGK1O00141 431 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 DDX3XO00571 662 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLK3-224ENST00000568605 MFAP3LO75121 409 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 ADCY5O95622 1261 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 FTLP02792 175 aaPredicted RBP13.41□□□□□ -0.26
CLK3-224ENST00000568605 ASLP04424 464 aa13.41□□□□□ -0.26
CLK3-224ENST00000568605 HNRNPLP14866 589 aaKnown RBP eCLIP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms