RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 PAEPP09466 180 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 ATXN1LP0C7T5 689 aaKnown RBP13.5□□□□□ -0.25
SF3B3-202ENST00000562722 PIK3R6Q5UE93 754 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 LCLAT1Q6UWP7 414 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 LAYNQ6UX15 382 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 PPM1KQ8N3J5 372 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 ZNF557Q8N988 423 aaPredicted RBP13.5□□□□□ -0.25
SF3B3-202ENST00000562722 HJURPQ8NCD3 748 aaPredicted RBP13.5□□□□□ -0.25
SF3B3-202ENST00000562722 ENGASEQ8NFI3 743 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 WFDC5Q8TCV5 224 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 IRGQQ8WZA9 623 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 BIRC7Q96CA5 298 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 NT5C1BQ96P26 610 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 DDX50Q9BQ39 737 aaKnown RBP13.5□□□□□ -0.25
SF3B3-202ENST00000562722 MIS12Q9H081 205 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 SGK2Q9HBY8 427 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 BTBD3Q9Y2F9 522 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 CEP83Q9Y592 693 aa13.5□□□□□ -0.25
SF3B3-202ENST00000562722 KCNK3O14649 394 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 IRAK2O43187 625 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 ACSL4O60488 711 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 LTFP02788 710 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 BRD2P25440 801 aaKnown RBP13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CD27P26842 260 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 SLC6A4P31645 630 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 GRIA4P48058 902 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 FMO5P49326 533 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CCT8P50990 548 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 PMS1P54277 932 aaKnown RBP13.49□□□□□ -0.25
SF3B3-202ENST00000562722 C21orf59P57076 290 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 IL9RQ01113 521 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 LRRC63Q05C16 580 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CETN1Q12798 172 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 STIM1Q13586 685 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CDH18Q13634 790 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CCDC40Q4G0X9 1142 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 FAM133BQ5BKY9 247 aaKnown RBP13.49□□□□□ -0.25
SF3B3-202ENST00000562722 MPP7Q5T2T1 576 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 PMF1Q6P1K2 205 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 MSANTD2Q6P1R3 559 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 ZC3H3Q8IXZ2 948 aaKnown RBP13.49□□□□□ -0.25
SF3B3-202ENST00000562722 SCML4Q8N228 414 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CARNMT1Q8N4J0 409 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 UBR7Q8N806 425 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 C1orf216Q8TAB5 229 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 MDM1Q8TC05 714 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CLEC4CQ8WTT0 213 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 TFAP2BQ92481 460 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 ERCC4Q92889 916 aaPredicted RBP13.49□□□□□ -0.25
SF3B3-202ENST00000562722 SMARCE1Q969G3 411 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 SLC35C1Q96A29 364 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 GSDMAQ96QA5 445 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 MTG2Q9H4K7 406 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 METTL14Q9HCE5 456 aaKnown RBP13.49□□□□□ -0.25
SF3B3-202ENST00000562722 KIAA1522Q9P206 1035 aaPredicted RBP13.49□□□□□ -0.25
SF3B3-202ENST00000562722 SPEGQ15772 3267 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 CKAP5Q14008 2032 aa13.49□□□□□ -0.25
SF3B3-202ENST00000562722 PKD1L2Q7Z442 2459 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 PSMA7O14818 248 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 FBXO21O94952 628 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 MOCS2O96007 188 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 GRK6P43250 576 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 SFSWAPQ12872 951 aaKnown RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 STILQ15468 1287 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 CNGA2Q16280 664 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 INAVAQ3KP66 663 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 PKDCCQ504Y2 493 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 KIAA0895LQ68EN5 471 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 KIAA0907Q7Z7F0 614 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 DHX40Q8IX18 779 aaKnown RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 BAHD1Q8TBE0 780 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 SLC35F5Q8WV83 523 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 IGSF8Q969P0 613 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 SERPINB11Q96P15 392 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 ACE2Q9BYF1 805 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 PABPC3Q9H361 631 aaKnown RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 OSGEPQ9NPF4 335 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 ST7Q9NRC1 585 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 FBXL12Q9NXK8 326 aa13.48□□□□□ -0.25
SF3B3-202ENST00000562722 HOOK1Q9UJC3 728 aaKnown RBP13.48□□□□□ -0.25
SF3B3-202ENST00000562722 H0Y8X5 98 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 ZZEF1O43149 2961 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 TNFSF14O43557 240 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 SIN3BO75182 1162 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 RNASEH2AO75792 299 aaKnown RBP13.47□□□□□ -0.25
SF3B3-202ENST00000562722 MOCS3O95396 460 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 CALCAP01258 141 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 IGLV3-27P01718 113 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 ASLP04424 464 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 CAPNS1P04632 268 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 CSKP41240 450 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 RPS24P62847 133 aaKnown RBP13.47□□□□□ -0.25
SF3B3-202ENST00000562722 NUCB2P80303 420 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 COBLL1Q53SF7 1204 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 RNF219Q5W0B1 726 aaPredicted RBP13.47□□□□□ -0.25
SF3B3-202ENST00000562722 ISM2Q6H9L7 571 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 RRAGAQ7L523 313 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 TMPRSS7Q7RTY8 843 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 MARCH9Q86YJ5 346 aa13.47□□□□□ -0.25
SF3B3-202ENST00000562722 FMR1NBQ8N0W7 255 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms