RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TPSAB1Q15661 275 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 RTP2Q5QGT7 225 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 TTC19Q6DKK2 380 aaPredicted RBP17.35■□□□□ 0.37
LDLR-206ENST00000557958 PRSS55Q6UWB4 352 aaPredicted RBP17.35■□□□□ 0.37
LDLR-206ENST00000557958 LRRC31Q6UY01 552 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 ANKS3Q6ZW76 656 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 ANKMY2Q8IV38 441 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 CCDC13Q8IYE1 715 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 CMTR2Q8IYT2 770 aaKnown RBP17.35■□□□□ 0.37
LDLR-206ENST00000557958 CCNYQ8ND76 341 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 FBXO36Q8NEA4 188 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 SPPL2BQ8TCT7 592 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 C2orf15Q8WU43 125 aaKnown RBP17.35■□□□□ 0.37
LDLR-206ENST00000557958 CENPTQ96BT3 561 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 LRRC39Q96DD0 335 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 TMEM169Q96HH4 297 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 SERPINB11Q96P15 392 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 TTPALQ9BTX7 342 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 OSBPL2Q9H1P3 480 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 EPN3Q9H201 632 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 TMPRSS4Q9NRS4 437 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 ACTL7BQ9Y614 415 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 PTPRDP23468 1912 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 NLRC5Q86WI3 1866 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 TCRBV7S3A2A0A539 114 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 ERCC2P18074 760 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 CA8P35219 290 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 NRLP54845 237 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 AP1B1Q10567 949 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 TADA2BQ86TJ2 420 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 FIBCD1Q8N539 461 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 COLGALT1Q8NBJ5 622 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 HAPLN3Q96S86 360 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 ETNK1Q9HBU6 452 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 XAB2Q9HCS7 855 aaKnown RBP17.35■□□□□ 0.37
LDLR-206ENST00000557958 RTN3O95197 1032 aaPredicted RBP17.34■□□□□ 0.37
LDLR-206ENST00000557958 SLC2A3P11169 496 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 LAG3P18627 525 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 GEMIN4P57678 1058 aaKnown RBP17.34■□□□□ 0.37
LDLR-206ENST00000557958 SEMA5AQ13591 1074 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 HP1BP3Q5SSJ5 553 aaPredicted RBP17.34■□□□□ 0.37
LDLR-206ENST00000557958 C3orf62Q6ZUJ4 267 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 BCAS4Q8TDM0 211 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 LGMNQ99538 433 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 RC3H2Q9HBD1 1191 aaKnown RBP17.34■□□□□ 0.37
LDLR-206ENST00000557958 ARHGEF38Q9NXL2 777 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 SENP1Q9P0U3 644 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 LTBP2Q14767 1821 aa17.34■□□□□ 0.37
LDLR-206ENST00000557958 TLL1O43897 1013 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 CSPG5O95196 566 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 EPHB2P29323 1055 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 PPP2R5DQ14738 602 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 USP41Q3LFD5 358 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 MSS51Q4VC12 460 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 ANKRD20A2Q5SQ80 823 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 ANKRD20A1Q5TYW2 823 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 ANKRD20A3Q5VUR7 823 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 SRLQ86TD4 932 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 HERVK_113Q902F9 699 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 COMMD8Q9NX08 183 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 SPG21Q9NZD8 308 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 PSMC3IPQ9P2W1 217 aaPredicted RBP17.33■□□□□ 0.37
LDLR-206ENST00000557958 INSL6Q9Y581 213 aa17.33■□□□□ 0.37
LDLR-206ENST00000557958 FAM72CH0Y354 149 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 RNF103O00237 685 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 RPL17P18621 184 aaKnown RBP17.33■□□□□ 0.36
LDLR-206ENST00000557958 PSEN1P49768 467 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 COG7P83436 770 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 GAD2Q05329 585 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 GPR17Q13304 367 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 FAM72AQ5TYM5 149 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 FAM72DQ6L9T8 149 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 CAPN12Q6ZSI9 719 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 EXOC3L1Q86VI1 746 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 FAM72BQ86X60 149 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 HERC6Q8IVU3 1022 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 P2RY11Q96G91 374 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 PRDM12Q9H4Q4 367 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 ACSS3Q9H6R3 686 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 EIF2B3Q9NR50 452 aaKnown RBP17.33■□□□□ 0.36
LDLR-206ENST00000557958 INTS9Q9NV88 658 aaKnown RBP17.33■□□□□ 0.36
LDLR-206ENST00000557958 MFHAS1Q9Y4C4 1052 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 PCDHB12Q9Y5F1 795 aa17.33■□□□□ 0.36
LDLR-206ENST00000557958 CLUHO75153 1309 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 A0A1W2PQH9 124 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 POC1B-GALNT4F8VUJ3 575 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 FGF10O15520 208 aaPredicted RBP17.32■□□□□ 0.36
LDLR-206ENST00000557958 LRIG2O94898 1065 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 GSTA2P09210 222 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 VAV1P15498 845 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 DNAJB2P25686 324 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 STX2P32856 288 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 ELK3P41970 407 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 GPX6P59796 221 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 RPL10AP62906 217 aaKnown RBP17.32■□□□□ 0.36
LDLR-206ENST00000557958 EIF4EBP2Q13542 120 aaPredicted RBP17.32■□□□□ 0.36
LDLR-206ENST00000557958 TMED2Q15363 201 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 DENND5BQ6ZUT9 1274 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 SLC39A11Q8N1S5 342 aa17.32■□□□□ 0.36
LDLR-206ENST00000557958 CYTH2Q99418 400 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms