RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SH2D7A6NKC9 451 aaPredicted RBP8.11□□□□□ -1.11
NUP54-215ENST00000514313 NPIPB5A8MRT5 1133 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 FAM90A22PA8MWA6 464 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 FAM90A12PA8MX19 464 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 FAM90A23PA8MXZ1 464 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 NPIPB4C9JG80 1138 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 H0YIZ8 118 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 TNPO2O14787 897 aaKnown RBP8.11□□□□□ -1.11
NUP54-215ENST00000514313 GUCY1B2O75343 617 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 IGFBP2P18065 325 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 CHMP24386 653 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 PRKCHP24723 683 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 PTGS2P35354 604 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 CDSNQ15517 529 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 PLAC9Q5JTB6 97 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 KYAT3Q6YP21 454 aaKnown RBP8.11□□□□□ -1.11
NUP54-215ENST00000514313 RNF207Q6ZRF8 634 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 BEND2Q8NDZ0 799 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 ABHD11Q8NFV4 315 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 PROKR1Q8TCW9 393 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 KCNG4Q8TDN1 519 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 RNFT2Q96EX2 444 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 CTDSP1Q9GZU7 261 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 INTS2Q9H0H0 1204 aaKnown RBP8.11□□□□□ -1.11
NUP54-215ENST00000514313 SMPD4Q9NXE4 827 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 ZDHHC7Q9NXF8 308 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 MTMR4Q9NYA4 1195 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 CD207Q9UJ71 328 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 SUFUQ9UMX1 484 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 ENTPD2Q9Y5L3 495 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 ZNF213O14771 459 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 FIBPO43427 364 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 TULP3O75386 442 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 PDE8BO95263 885 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 PEX11BO96011 259 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 NPSP0C0P6 89 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 EBLN1P0CF75 366 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 DUSP1P28562 367 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 NAP1L1P55209 391 aaKnown RBP8.1□□□□□ -1.11
NUP54-215ENST00000514313 PLP2Q04941 152 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 GAB1Q13480 694 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 SEC23BQ15437 767 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 MEA1Q16626 185 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 RNASE12Q5GAN4 147 aaKnown RBP8.1□□□□□ -1.11
NUP54-215ENST00000514313 FAM205BPQ63HN1 556 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 KAZNQ674X7 775 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 LAIR1Q6GTX8 287 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 Q6ZNX1 250 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 TMTC3Q6ZXV5 915 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 WDR53Q7Z5U6 358 aaPredicted RBP8.1□□□□□ -1.11
NUP54-215ENST00000514313 PEG10Q86TG7 708 aaKnown RBP8.1□□□□□ -1.11
NUP54-215ENST00000514313 SFTPA1Q8IWL2 248 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 SLC44A3Q8N4M1 653 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 PDILTQ8N807 584 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 C12orf76Q8N812 135 aaPredicted RBP8.1□□□□□ -1.11
NUP54-215ENST00000514313 KCNJ9Q92806 393 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 HAS1Q92839 578 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 THAP7Q9BT49 309 aaPredicted RBP8.1□□□□□ -1.11
NUP54-215ENST00000514313 KRTAP3-1Q9BYR8 98 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 SERTAD4Q9NUC0 356 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 ADAMTS5Q9UNA0 930 aa8.1□□□□□ -1.11
NUP54-215ENST00000514313 C1RP00736 705 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 MYCLP12524 364 aaPredicted RBP8.09□□□□□ -1.11
NUP54-215ENST00000514313 AVPR2P30518 371 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 SLC8A1P32418 973 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 DRG2P55039 364 aaKnown RBP8.09□□□□□ -1.11
NUP54-215ENST00000514313 B4GALNT1Q00973 533 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 CAMK1Q14012 370 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 TBCEQ15813 527 aaPredicted RBP8.09□□□□□ -1.11
NUP54-215ENST00000514313 ZMIZ2Q8NF64 920 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 NFKBIDQ8NI38 313 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 RUFY2Q8WXA3 655 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 AKAP1Q92667 903 aaKnown RBP eCLIP8.09□□□□□ -1.11
NUP54-215ENST00000514313 CDK5RAP1Q96SZ6 601 aaKnown RBP8.09□□□□□ -1.11
NUP54-215ENST00000514313 HTATIP2Q9BUP3 242 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 HDHD5Q9BXW7 423 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 KRTAP9-2Q9BYQ4 174 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 SLC2A4RGQ9NR83 387 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 SLC22A11Q9NSA0 550 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 ALKBH4Q9NXW9 302 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 FZD4Q9ULV1 537 aa8.09□□□□□ -1.11
NUP54-215ENST00000514313 TDRD9Q8NDG6 1382 aaKnown RBP8.09□□□□□ -1.12
NUP54-215ENST00000514313 LINC00473A8K010 186 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.08□□□□□ -1.12
NUP54-215ENST00000514313 ARSAP15289 507 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 NDUFB7P17568 137 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 PRPH2P23942 346 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 NDUFS1P28331 727 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 EPHA8P29322 1005 aaPredicted RBP8.08□□□□□ -1.12
NUP54-215ENST00000514313 HARS2P49590 506 aaKnown RBP8.08□□□□□ -1.12
NUP54-215ENST00000514313 AGTR2P50052 363 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 UBAP2Q5T6F2 1119 aaKnown RBP8.08□□□□□ -1.12
NUP54-215ENST00000514313 SNX30Q5VWJ9 437 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 ANKRD16Q6P6B7 361 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 TMEM88Q6PEY1 159 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 MTHFD1LQ6UB35 978 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 SLC39A5Q6ZMH5 540 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 KRBA2Q6ZNG9 492 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 MRGPREQ86SM8 312 aa8.08□□□□□ -1.12
NUP54-215ENST00000514313 ADGRG6Q86SQ4 1221 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms