RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 GLIS1Q8NBF1 620 aa19.21■□□□□ 0.67
CLN3-206ENST00000360019 TRPC7Q9HCX4 862 aa19.21■□□□□ 0.67
CLN3-206ENST00000360019 DOCK6Q96HP0 2047 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 E9PAM4 449 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 HOXA9P31269 272 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 GDF10P55107 478 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 LMNB2Q03252 620 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 TRIP13Q15645 432 aaPredicted RBP19.2■□□□□ 0.66
CLN3-206ENST00000360019 NUGGCQ68CJ6 796 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 SYDE1Q6ZW31 735 aaPredicted RBP19.2■□□□□ 0.66
CLN3-206ENST00000360019 GSTA5Q7RTV2 222 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 ZNF683Q8IZ20 524 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 CCDC33Q8N5R6 958 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 NETO2Q8NC67 525 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 IFT81Q8WYA0 676 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 ZFRQ96KR1 1074 aaKnown RBP19.2■□□□□ 0.66
CLN3-206ENST00000360019 OLFM3Q96PB7 478 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 CYP2S1Q96SQ9 504 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 KLF16Q9BXK1 252 aaPredicted RBP19.2■□□□□ 0.66
CLN3-206ENST00000360019 LMAN2LQ9H0V9 348 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 ASAH2Q9NR71 780 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 GKN1Q9NS71 199 aa19.2■□□□□ 0.66
CLN3-206ENST00000360019 A0A1W2PRU2 124 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 ECHS1P30084 290 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 CCR2P41597 374 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 COG7P83436 770 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 RBM10P98175 930 aaKnown RBP19.19■□□□□ 0.66
CLN3-206ENST00000360019 RWDD4Q6NW29 188 aaKnown RBP19.19■□□□□ 0.66
CLN3-206ENST00000360019 TMCO3Q6UWJ1 677 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 UNC45BQ8IWX7 931 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 TP53INP2Q8IXH6 220 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 NPWQ8N729 165 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 LRRN4Q8WUT4 740 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 TBC1D31Q96DN5 1066 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 SLC12A6Q9UHW9 1150 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 SNX24Q9Y343 169 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 XIRP2A4UGR9 3374 aa19.19■□□□□ 0.66
CLN3-206ENST00000360019 DENND4CQ5VZ89 1909 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 H7C0C1 242 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 SGK1O00141 431 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 RFXAPO00287 272 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 STC2O76061 302 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 MYL4P12829 197 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 GJA1P17302 382 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 HTR7P34969 479 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 RPL21P46778 160 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 ATP5OP48047 213 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 EPHA5P54756 1037 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 AUHQ13825 339 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 RAP1GAP2Q684P5 730 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 NADSYN1Q6IA69 706 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 ARL14EPQ8N8R7 260 aaPredicted RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 MRPS31Q92665 395 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 PRMT1Q99873 361 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 ATXN3LQ9H3M9 355 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 ARGLU1Q9NWB6 273 aaPredicted RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 DNMT3BQ9UBC3 853 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 VANGL2Q9ULK5 521 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 NFU1Q9UMS0 254 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 KRT14P02533 472 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 HNRNPA1P09651 372 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLN3-206ENST00000360019 ZSCAN5DPP0CG00 497 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 MBL2P11226 248 aaPredicted RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 ETS1P14921 441 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 CDC25CP30307 473 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 DRG2P55039 364 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 DUSP6Q16828 381 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 STXBP5Q5T5C0 1151 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 ZNF697Q5TEC3 545 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 DARS2Q6PI48 645 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 WBP2Q969T9 261 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 PLD4Q96BZ4 506 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 TIFAQ96CG3 184 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 NEUROG2Q9H2A3 272 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 TLE6Q9H808 572 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 SMPD4Q9NXE4 827 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 GRHL1Q9NZI5 618 aa19.18■□□□□ 0.66
CLN3-206ENST00000360019 SPTBN5Q9NRC6 3674 aaKnown RBP19.18■□□□□ 0.66
CLN3-206ENST00000360019 MYO9BQ13459 2157 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 GOLGA6L7A0A1B0GV03 622 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 KLKB1P03952 638 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 IRF1P10914 325 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 HDCP19113 662 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 IVDP26440 423 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 NRIP1P48552 1158 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 VPS41P49754 854 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 IRAK1P51617 712 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 NRLP54845 237 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 ZXDBP98169 803 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 XRCC4Q13426 336 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 CUL1Q13616 776 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 MAB21L3Q8N8X9 362 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 FAM71DQ8N9W8 422 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 RSAD2Q8WXG1 361 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 ZNF707Q96C28 371 aaPredicted RBP19.17■□□□□ 0.66
CLN3-206ENST00000360019 MYEOVQ96EZ4 313 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 KLC2Q9H0B6 622 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 USP29Q9HBJ7 922 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 FAM114A2Q9NRY5 505 aa19.17■□□□□ 0.66
CLN3-206ENST00000360019 ZDHHC7Q9NXF8 308 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms