RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CLCN3P51790 818 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 ALDH18A1P54886 795 aaKnown RBP10.71□□□□□ -0.69
LIG1-220ENST00000601091 AP1B1Q10567 949 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 RIPK1Q13546 671 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 PDK2Q15119 407 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 MROH9Q5TGP6 573 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 RXFP2Q8WXD0 754 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 Q9H521 79 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 SLCO1B3Q9NPD5 702 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 PCDH12Q9NPG4 1184 aa10.71□□□□□ -0.69
LIG1-220ENST00000601091 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.71□□□□□ -0.69
LIG1-220ENST00000601091 NAV1Q8NEY1 1877 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 hCG_1818297A0A087WSY0 165 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 APOC4-APOC2K7ER74 178 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 M0QZ92 97 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 AGR2O95994 175 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 APOC2P02655 101 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 CYP1A1P04798 512 aaPredicted RBP10.71□□□□□ -0.7
LIG1-220ENST00000601091 HSMCR30P0CW71 290 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 IDO1P14902 403 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 TAC1P20366 129 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 ADORA2BP29275 332 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 CCR3P51677 355 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 EPHB1P54762 984 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 CDH8P55286 799 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 COG7P83436 770 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 DAB2P98082 770 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 DNAL1Q4LDG9 190 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 ABHD15Q6UXT9 468 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 PPP1R36Q96LQ0 422 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 CCDC134Q9H6E4 229 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 C10orf88Q9H8K7 445 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 CYP3A43Q9HB55 503 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 FAM49BQ9NUQ9 324 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 NDE1Q9NXR1 346 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 RIPK3Q9Y572 518 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 ARAP2Q8WZ64 1704 aa10.71□□□□□ -0.7
LIG1-220ENST00000601091 ASB14A6NK59 587 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 ABLIM1O14639 778 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 HUS1O60921 280 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 MAP3K6O95382 1288 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 CBX6O95503 412 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 CXCL8P10145 99 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 PTPRAP18433 802 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 MIPP30301 263 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 ENPEPQ07075 957 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SEMA3AQ14563 771 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 CHI3L2Q15782 390 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SLC45A4Q5BKX6 768 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 FSCBQ5H9T9 825 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 ISLR2Q6UXK2 745 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 PID1Q7Z2X4 250 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 HIPK4Q8NE63 616 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SPOCK2Q92563 424 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 INPP5DQ92835 1189 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 NAF1Q96HR8 494 aaKnown RBP10.7□□□□□ -0.7
LIG1-220ENST00000601091 FBXL18Q96ME1 805 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 HERC2P3Q9BVR0 1158 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SMYD2Q9NRG4 433 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 GRID1Q9ULK0 1009 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 STAP1Q9ULZ2 295 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SLC30A1Q9Y6M5 507 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 PHLPP1O60346 1717 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 ACKR2O00590 384 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 MGRN1O60291 552 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SLC25A27O95847 323 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 MYL2P10916 166 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 LCP1P13796 627 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 TGFB2P61812 414 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 ANKRD20A2Q5SQ80 823 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 ANKRD20A1Q5TYW2 823 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 POLNQ7Z5Q5 900 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 NSMCE3Q96MG7 304 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 CATSPER2Q96P56 530 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 THTPAQ9BU02 230 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 PIH1D1Q9NWS0 290 aaKnown RBP10.7□□□□□ -0.7
LIG1-220ENST00000601091 LGALS13Q9UHV8 139 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 H3BRJ5 948 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 PENKP01210 267 aaPredicted RBP10.7□□□□□ -0.7
LIG1-220ENST00000601091 TFPTP0C1Z6 253 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 STAG3L1P0CL83 205 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SRGAP2BP0DMP2 458 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 CALB2P22676 271 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 RPL22P35268 128 aaKnown RBP10.7□□□□□ -0.7
LIG1-220ENST00000601091 DPYSL3Q14195 570 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 MDH1BQ5I0G3 518 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 WASHC2DQ5SRD0 308 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 BBS12Q6ZW61 710 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 FITM2Q8N6M3 262 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 DDHD1Q8NEL9 900 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 CD101Q93033 1021 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SCPEP1Q9HB40 452 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 SAR1AQ9NR31 198 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.7□□□□□ -0.72e-6■■■■□ 22.1
LIG1-220ENST00000601091 EIF2B4Q9UI10 523 aaKnown RBP10.7□□□□□ -0.7
LIG1-220ENST00000601091 SQORQ9Y6N5 450 aa10.7□□□□□ -0.7
LIG1-220ENST00000601091 DDX60Q8IY21 1712 aaKnown RBP10.7□□□□□ -0.7
LIG1-220ENST00000601091 KPNA7A9QM74 516 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 APOA4P06727 396 aa10.69□□□□□ -0.7
LIG1-220ENST00000601091 BGNP21810 368 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 1139.7 ms