RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HS3ST4Q9Y661 456 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 GPR179Q6PRD1 2367 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CHD5Q8TDI0 1954 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 H0Y858 1186 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 M0QYT0 321 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 MAN2B1O00754 1011 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 CAPN9O14815 690 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 CCP110O43303 1012 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 GALR2O43603 387 aaPredicted RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 ADAM23O75077 832 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 RNF40O75150 1001 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 MOCS2O96007 188 aaPredicted RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 FTLP02792 175 aaPredicted RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 TCF4P15884 667 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 TACR2P21452 398 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 EIF4A3P38919 411 aaKnown RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 SULT1E1P49888 294 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 SEC13P55735 322 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 GAD2Q05329 585 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 GFPT1Q06210 699 aaPredicted RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 RING1Q06587 406 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 NME3Q13232 169 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 NNTQ13423 1086 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 MAMLD1Q13495 774 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 RAP1GAP2Q684P5 730 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 PLEKHA7Q6IQ23 1121 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 TADA2BQ86TJ2 420 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 SUGP1Q8IWZ8 645 aaKnown RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 CCDC185Q8N715 623 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 C3orf20Q8ND61 904 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 SORCS1Q8WY21 1168 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 SYN2Q92777 582 aaPredicted RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 OTUB2Q96DC9 234 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 PGAP3Q96FM1 320 aaPredicted RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 SHDQ96IW2 340 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 SERPINB11Q96P15 392 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 PEBP4Q96S96 227 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 BBS2Q9BXC9 721 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 SYNCQ9H7C4 482 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 ABHD10Q9NUJ1 306 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 FAM86C1Q9NVL1 165 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 ZNF212Q9UDV6 495 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 INTS6Q9UL03 887 aaKnown RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 STRIP2Q9ULQ0 834 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 TFR2Q9UP52 801 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 LUC7L2Q9Y383 392 aaKnown RBP9.57□□□□□ -0.88
VPS35-206ENST00000565228 CFAP47Q6ZTR5 3102 aa9.57□□□□□ -0.88
VPS35-206ENST00000565228 SDK1Q7Z5N4 2213 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 SIGLEC16A6NMB1 481 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 WASH3PC4AMC7 463 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 FAM72CH0Y354 149 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 SLC9A3R1O14745 358 aaPredicted RBP9.56□□□□□ -0.88
VPS35-206ENST00000565228 SART1O43290 800 aaKnown RBP9.56□□□□□ -0.88
VPS35-206ENST00000565228 PAGE1O75459 146 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 CNTN5O94779 1100 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 KAT7O95251 611 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 SERPING1P05155 500 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 HLA-FP30511 346 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 CD70P32970 193 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 NSFP46459 744 aaKnown RBP9.56□□□□□ -0.88
VPS35-206ENST00000565228 RPS9P46781 194 aaKnown RBP9.56□□□□□ -0.88
VPS35-206ENST00000565228 ATP11AP98196 1134 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 CDK17Q00537 523 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 SLC25A52Q3SY17 297 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 ALFQ53S48 1182 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 DGKKQ5KSL6 1271 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 ADGRF1Q5T601 910 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 FAM72AQ5TYM5 149 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 EGFLAMQ63HQ2 1017 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 FAM72DQ6L9T8 149 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 FBXL22Q6P050 247 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 TMEM92Q6UXU6 159 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 ARCQ7LC44 396 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 KIAA0907Q7Z7F0 614 aaPredicted RBP9.56□□□□□ -0.88
VPS35-206ENST00000565228 FAM72BQ86X60 149 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 FAM131BQ86XD5 332 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 ZDHHC17Q8IUH5 632 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 USP33Q8TEY7 942 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 NELL1Q92832 810 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 AZIN2Q96A70 460 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 ERLEC1Q96DZ1 483 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 BTBD6Q96KE9 485 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 MCEEQ96PE7 176 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 NOX5Q96PH1 765 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 TRIM5Q9C035 493 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 THAP2Q9H0W7 228 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 FAM204AQ9H8W3 233 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 PRMT8Q9NR22 394 aaPredicted RBP9.56□□□□□ -0.88
VPS35-206ENST00000565228 LSM7Q9UK45 103 aaKnown RBP9.56□□□□□ -0.88
VPS35-206ENST00000565228 CEP83Q9Y592 693 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 CKAP5Q14008 2032 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 NUP205Q92621 2012 aa9.56□□□□□ -0.88
VPS35-206ENST00000565228 ABCA7Q8IZY2 2146 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 FRYLO94915 3013 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 TMEM191CA6NGB0 347 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 SGK1O00141 431 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 CBFA2T2O43439 604 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 TBL1XO60907 577 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 RTN2O75298 545 aa9.55□□□□□ -0.88
VPS35-206ENST00000565228 LATS1O95835 1130 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms