RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 C4BPAP04003 597 aaKnown RBP13□□□□□ -0.33
CAPN1-223ENST00000533079 IGHV4-34P06331 123 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 ASPAP45381 313 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 ARRB1P49407 418 aaPredicted RBP13□□□□□ -0.33
CAPN1-223ENST00000533079 RPS14P62263 151 aaKnown RBP13□□□□□ -0.33
CAPN1-223ENST00000533079 ASIC1P78348 528 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 RHDQ02161 417 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 TBC1D25Q3MII6 688 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 KCNT1Q5JUK3 1230 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 KIAA0895LQ68EN5 471 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 SCD5Q86SK9 330 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 DDX51Q8N8A6 666 aaKnown RBP eCLIP13□□□□□ -0.33
CAPN1-223ENST00000533079 ZNF557Q8N988 423 aaPredicted RBP13□□□□□ -0.33
CAPN1-223ENST00000533079 SAP25Q8TEE9 199 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 PARD3BQ8TEW8 1205 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 TMEM174Q8WUU8 243 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 SORCS1Q8WY21 1168 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 RFFLQ8WZ73 363 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 TSC1Q92574 1164 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 HPS3Q969F9 1004 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 JAKMIP2Q96AA8 810 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 CYFIP2Q96F07 1278 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 GDF3Q9NR23 364 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 NUDT5Q9UKK9 219 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 NCKAP1Q9Y2A7 1128 aa13□□□□□ -0.33
CAPN1-223ENST00000533079 PLXNA2O75051 1894 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 VPS37CA5D8V6 355 aaPredicted RBP12.99□□□□□ -0.33
CAPN1-223ENST00000533079 KCNK3O14649 394 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 VNN1O95497 513 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 LATS1O95835 1130 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 F13A1P00488 732 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 ASS1P00966 412 aaKnown RBP12.99□□□□□ -0.33
CAPN1-223ENST00000533079 HOXD9P28356 352 aaPredicted RBP12.99□□□□□ -0.33
CAPN1-223ENST00000533079 EPHA8P29322 1005 aaPredicted RBP12.99□□□□□ -0.33
CAPN1-223ENST00000533079 HLA-FP30511 346 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 CASP4P49662 377 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 CXADRP78310 365 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 EHHADHQ08426 723 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 EFEMP1Q12805 493 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 GATAD2AQ86YP4 633 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 DENND1CQ8IV53 801 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 NELFCDQ8IXH7 590 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 NT5C1AQ9BXI3 368 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 IMPG2Q9BZV3 1241 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 MAGEF1Q9HAY2 307 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 LMBRD1Q9NUN5 540 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 MARCH2Q9P0N8 246 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 SUN2Q9UH99 717 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 ZNF462Q96JM2 2506 aa12.99□□□□□ -0.33
CAPN1-223ENST00000533079 BRINP1O60477 761 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 ATP5BP06576 529 aaKnown RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 DLDP09622 509 aaKnown RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 CD38P28907 300 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 HARS2P49590 506 aaKnown RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 TMPRSS3P57727 454 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 DNAJC3Q13217 504 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 SLC39A14Q15043 492 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 E2F4Q16254 413 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 KNOP1Q1ED39 458 aaKnown RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 ZACNQ401N2 412 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 SLC45A4Q5BKX6 768 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 BROXQ5VW32 411 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 PCSK4Q6UW60 755 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 UNC13DQ70J99 1090 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 RSRC2Q7L4I2 434 aaKnown RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 KIAA0907Q7Z7F0 614 aaPredicted RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 ERICH1Q86X53 443 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 SPACA3Q8IXA5 215 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 PDILTQ8N807 584 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 ZNF248Q8NDW4 579 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 PLEKHO2Q8TD55 490 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 SLC6A18Q96N87 628 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 DUSP16Q9BY84 665 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 IRX2Q9BZI1 471 aaPredicted RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 RSPH9Q9H1X1 276 aaPredicted RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 PABPC3Q9H361 631 aaKnown RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 ZSCAN16Q9H4T2 348 aaPredicted RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 ERVMER34-1Q9H9K5 563 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 CYP3A43Q9HB55 503 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 PRSS16Q9NQE7 514 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 OLA1Q9NTK5 396 aaKnown RBP12.98□□□□□ -0.33
CAPN1-223ENST00000533079 GGA2Q9UJY4 613 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 STOML2Q9UJZ1 356 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 FZD4Q9ULV1 537 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 CLEC4EQ9ULY5 219 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 CLCA2Q9UQC9 943 aa12.98□□□□□ -0.33
CAPN1-223ENST00000533079 LRRC72A6NJI9 287 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 RNASEH1O60930 286 aaKnown RBP12.97□□□□□ -0.33
CAPN1-223ENST00000533079 HMBSP08397 361 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 SLFN14P0C7P3 912 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 PABPC1P11940 636 aaKnown RBP12.97□□□□□ -0.33
CAPN1-223ENST00000533079 PIK3CAP42336 1068 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 PCBP4P57723 403 aaKnown RBP12.97□□□□□ -0.33
CAPN1-223ENST00000533079 SHBQ15464 509 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 TRIP4Q15650 581 aaPredicted RBP12.97□□□□□ -0.33
CAPN1-223ENST00000533079 KLHL40Q2TBA0 621 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 PKDCCQ504Y2 493 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 TAF1BQ53T94 588 aaPredicted RBP12.97□□□□□ -0.33
CAPN1-223ENST00000533079 SFMBT2Q5VUG0 894 aa12.97□□□□□ -0.33
CAPN1-223ENST00000533079 ATL3Q6DD88 541 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms