RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 AMFRQ9UKV5 643 aa8.16□□□□□ -1.1
NUP54-215ENST00000514313 COPG1Q9Y678 874 aaKnown RBP8.16□□□□□ -1.1
NUP54-215ENST00000514313 SUV39H1O43463 412 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 DHX16O60231 1041 aaKnown RBP8.15□□□□□ -1.1
NUP54-215ENST00000514313 GFPT2O94808 682 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 TMEM63AO94886 807 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 F9P00740 461 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 ALDOAP04075 364 aaKnown RBP8.15□□□□□ -1.1
NUP54-215ENST00000514313 DLDP09622 509 aaKnown RBP8.15□□□□□ -1.1
NUP54-215ENST00000514313 WEE2P0C1S8 567 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 LYL1P12980 280 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 ENGP17813 658 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 MATN1P21941 496 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 GALNSP34059 522 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 CCDC15Q0P6D6 951 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 SPDYAQ5MJ70 313 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 C16orf54Q6UWD8 224 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 FASTKD5Q7L8L6 764 aaKnown RBP8.15□□□□□ -1.1
NUP54-215ENST00000514313 MASTLQ96GX5 879 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 LENG8Q96PV6 779 aaPredicted RBP8.15□□□□□ -1.1
NUP54-215ENST00000514313 CINPQ9BW66 212 aaPredicted RBP8.15□□□□□ -1.1
NUP54-215ENST00000514313 SYNPO2LQ9H987 977 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 USP29Q9HBJ7 922 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 ARHGEF3Q9NR81 526 aa8.15□□□□□ -1.1
NUP54-215ENST00000514313 SETD1BQ9UPS6 1966 aaKnown RBP8.15□□□□□ -1.11
NUP54-215ENST00000514313 FSD2A1L4K1 749 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 ANKRD18BA2A2Z9 1011 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 MPPED1O15442 326 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 C1SP09871 688 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 FPR3P25089 353 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 FOLR3P41439 243 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 GPC5P78333 572 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 CDK18Q07002 472 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 LMAN2Q12907 356 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 ERV3-1Q14264 604 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 SPATA1Q5VX52 437 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 NAA35Q5VZE5 725 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 KIAA0895LQ68EN5 471 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 RHOUQ7L0Q8 258 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 PARS2Q7L3T8 475 aaKnown RBP8.14□□□□□ -1.11
NUP54-215ENST00000514313 ZNF551Q7Z340 670 aaPredicted RBP8.14□□□□□ -1.11
NUP54-215ENST00000514313 TAOK3Q9H2K8 898 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 MROH8Q9H579 483 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 DUSP22Q9NRW4 184 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 ABHD10Q9NUJ1 306 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 DLL3Q9NYJ7 618 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 CNOT7Q9UIV1 285 aaKnown RBP8.14□□□□□ -1.11
NUP54-215ENST00000514313 CAMK2AQ9UQM7 478 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 TESMINQ9Y4I5 508 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 KAT6BQ8WYB5 2073 aa8.14□□□□□ -1.11
NUP54-215ENST00000514313 PIPSLA2A3N6 862 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 C3orf70A6NLC5 250 aaPredicted RBP8.13□□□□□ -1.11
NUP54-215ENST00000514313 K7ESM1 405 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 KAT7O95251 611 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 HOXA5P20719 270 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 JAK3P52333 1124 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 TBL3Q12788 808 aaKnown RBP8.13□□□□□ -1.11
NUP54-215ENST00000514313 PRICKLE4Q2TBC4 344 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 FAM69AQ5T7M9 428 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 ABHD17BQ5VST6 288 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 KIRREL2Q6UWL6 708 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 USP51Q70EK9 711 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 LENG9Q96B70 501 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 NPAS1Q99742 590 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 WDR11Q9BZH6 1224 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 USP44Q9H0E7 712 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 KRT84Q9NSB2 600 aa8.13□□□□□ -1.11
NUP54-215ENST00000514313 LAS1LQ9Y4W2 734 aaKnown RBP8.13□□□□□ -1.11
NUP54-215ENST00000514313 CYP3A7-CYP3A51PA0A087WV96 503 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 H3BNC9 293 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 K7ENM7 598 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 ZBED4O75132 1171 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 URI1O94763 535 aaPredicted RBP8.12□□□□□ -1.11
NUP54-215ENST00000514313 TNNT1P13805 278 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 CYP3A7P24462 503 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 CYP2C18P33260 490 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 PAFAH1B1P43034 410 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 POLD2P49005 469 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 KRTAP19-4Q3LI73 84 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 RUNDC3AQ59EK9 446 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 DENND2CQ68D51 928 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 KCNV1Q6PIU1 500 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 SLC22A25Q6T423 547 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 B4GALNT4Q76KP1 1039 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 CACTINQ8WUQ7 758 aaKnown RBP8.12□□□□□ -1.11
NUP54-215ENST00000514313 ELP4Q96EB1 424 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 EDC3Q96F86 508 aaKnown RBP8.12□□□□□ -1.11
NUP54-215ENST00000514313 PLEKHG4BQ96PX9 1271 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 SNX18Q96RF0 628 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 TREX2Q9BQ50 279 aaPredicted RBP8.12□□□□□ -1.11
NUP54-215ENST00000514313 MLST8Q9BVC4 326 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 FSD1LQ9BXM9 530 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 SLC25A18Q9H1K4 315 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 TTYH1Q9H313 450 aaPredicted RBP8.12□□□□□ -1.11
NUP54-215ENST00000514313 THAP1Q9NVV9 213 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 CLIC5Q9NZA1 410 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 NAALADL1Q9UQQ1 740 aa8.12□□□□□ -1.11
NUP54-215ENST00000514313 PI4KAP2A4QPH2 592 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 NPIPB13A6NJU9 1138 aa8.11□□□□□ -1.11
NUP54-215ENST00000514313 FAM90A7PA6NKC0 464 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms