RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LY6G5CQ5SRR4 150 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 ZFYVE27Q5T4F4 411 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 ADGRF1Q5T601 910 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 PIK3R6Q5UE93 754 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 NADSYN1Q6IA69 706 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 SLFN11Q7Z7L1 901 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 DAAM2Q86T65 1068 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 CPNE8Q86YQ8 564 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 LGI2Q8N0V4 545 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 KIAA1958Q8N8K9 716 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 FAM83CQ9BQN1 747 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 HPS4Q9NQG7 708 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 SPHK2Q9NRA0 654 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 GPATCH2LQ9NWQ4 482 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 GTSE1Q9NYZ3 720 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 SALL4Q9UJQ4 1053 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 FBXL21Q9UKT6 434 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 DUSP12Q9UNI6 340 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 HYOU1Q9Y4L1 999 aa15.5■□□□□ 0.07
NUP54-213ENST00000513352 TYW5A2RUC4 315 aaKnown RBP15.49■□□□□ 0.07
NUP54-213ENST00000513352 NEDD8-MDP1E9PL57 170 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 CYP17A1P05093 508 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 ADH5P11766 374 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 SLC6A4P31645 630 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 MAN1A1P33908 653 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 ADRA1BP35368 520 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 PCK1P35558 622 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 HADHBP55084 474 aaKnown RBP15.49■□□□□ 0.07
NUP54-213ENST00000513352 PFKPQ01813 784 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 TCEAL1Q15170 157 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 DHCR24Q15392 516 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 SMTNL2Q2TAL5 461 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 MS4A13Q5J8X5 152 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 TMEM25Q86YD3 366 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 ARFGAP1Q8N6T3 406 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 TPCN2Q8NHX9 752 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 DDI1Q8WTU0 396 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 HSPH1Q92598 858 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 AZIN2Q96A70 460 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 PEBP4Q96S96 227 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 SNRNP25Q9BV90 132 aaKnown RBP15.49■□□□□ 0.07
NUP54-213ENST00000513352 BBS2Q9BXC9 721 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 GOLPH3Q9H4A6 298 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 ECT2Q9H8V3 914 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 ANLNQ9NQW6 1124 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 STIM2Q9P246 746 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 FZD10Q9ULW2 581 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 USP18Q9UMW8 372 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 AP4E1Q9UPM8 1137 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 HS3ST4Q9Y661 456 aa15.49■□□□□ 0.07
NUP54-213ENST00000513352 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.49■□□□□ 0.07
NUP54-213ENST00000513352 UNC80Q8N2C7 3258 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 SPTBN5Q9NRC6 3674 aaKnown RBP15.48■□□□□ 0.07
NUP54-213ENST00000513352 ZSCAN12O43309 604 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 TCF4P15884 667 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 COMTP21964 271 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 MPPE1Q53F39 396 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 FAM133BQ5BKY9 247 aaKnown RBP15.48■□□□□ 0.07
NUP54-213ENST00000513352 RABGAP1LQ5R372 815 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 LRRC31Q6UY01 552 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 ADGRG2Q8IZP9 1017 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 CPXM2Q8N436 756 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 DNASE1L2Q92874 299 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 NTAN1Q96AB6 310 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 TMA16Q96EY4 203 aaKnown RBP15.48■□□□□ 0.07
NUP54-213ENST00000513352 CALR3Q96L12 384 aaKnown RBP15.48■□□□□ 0.07
NUP54-213ENST00000513352 RPRD1AQ96P16 312 aaPredicted RBP15.48■□□□□ 0.07
NUP54-213ENST00000513352 HAPLN3Q96S86 360 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 DHX35Q9H5Z1 703 aaKnown RBP15.48■□□□□ 0.07
NUP54-213ENST00000513352 TRMT1Q9NXH9 659 aaKnown RBP15.48■□□□□ 0.07
NUP54-213ENST00000513352 PLK2Q9NYY3 685 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 VANGL2Q9ULK5 521 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 CA14Q9ULX7 337 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 PYCARDQ9ULZ3 195 aa15.48■□□□□ 0.07
NUP54-213ENST00000513352 I6L893 689 aaPredicted RBP15.47■□□□□ 0.07
NUP54-213ENST00000513352 CREB3O43889 395 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 TBL1XO60907 577 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 SRGAP2O75044 1071 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 SLC1A1P43005 524 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 SOX9P48436 509 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 AIF1P55008 147 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 GAD2Q05329 585 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 AUHQ13825 339 aaKnown RBP15.47■□□□□ 0.07
NUP54-213ENST00000513352 KCNT1Q5JUK3 1230 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 ERMARDQ5T6L9 678 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 C11orf63Q6NUN7 778 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 RWDD4Q6NW29 188 aaKnown RBP15.47■□□□□ 0.07
NUP54-213ENST00000513352 RHBDF2Q6PJF5 856 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 CIR1Q86X95 450 aaPredicted RBP15.47■□□□□ 0.07
NUP54-213ENST00000513352 FAM217AQ8IXS0 508 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 CFAP52Q8N1V2 620 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 PYROXD2Q8N2H3 581 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 HJURPQ8NCD3 748 aaPredicted RBP15.47■□□□□ 0.07
NUP54-213ENST00000513352 TRIM44Q96DX7 344 aaPredicted RBP15.47■□□□□ 0.07
NUP54-213ENST00000513352 PRICKLE1Q96MT3 831 aaPredicted RBP15.47■□□□□ 0.07
NUP54-213ENST00000513352 SLC2A4RGQ9NR83 387 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 HEBP1Q9NRV9 189 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 STOML2Q9UJZ1 356 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 MIA3Q5JRA6 1907 aa15.47■□□□□ 0.07
NUP54-213ENST00000513352 GRID2IPA4D2P6 1211 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms