RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 FRMD5Q7Z6J6 570 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 BRSK2Q8IWQ3 736 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ATAD1Q8NBU5 361 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 MR1Q95460 341 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 SHISA7A6NL88 538 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 F8VP50 259 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 B4GALT4O60513 344 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 SERPINI2O75830 405 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ALFQ53S48 1182 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 DET1Q7L5Y6 550 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 PRSS58Q8IYP2 241 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 SH3RF2Q8TEC5 729 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KAT2BQ92831 832 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 MTBPQ96DY7 904 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 SPDL1Q96EA4 605 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KLHDC7BQ96G42 594 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC29A3Q9BZD2 475 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ZMYND12Q9H0C1 365 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 CHCHD3Q9NX63 227 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KLQ9UEF7 1012 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 GTF2A1LQ9UNN4 478 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 AAR2Q9Y312 384 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 CPQQ9Y646 472 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ONECUT3O60422 494 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KRT38O76015 456 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 OR4Q2P0C623 313 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 GSPT1P15170 499 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 TM4SF4P48230 202 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 MYL6P60660 151 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 UGP2Q16851 508 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 PLA2G4EQ3MJ16 856 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 MLIPQ5VWP3 458 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM131BQ86XD5 332 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 CCDC60Q8IWA6 550 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 FAR1Q8WVX9 515 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM167BQ9BTA0 163 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ADAMTS10Q9H324 1103 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 FANCLQ9NW38 375 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 CHURC1-FNTBB4DL54 471 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 MEFVO15553 781 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 CLEC3AO75596 197 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 CCNDBP1O95273 360 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 OXTRP30559 389 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 TUBB2AQ13885 445 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 Q4G0T1 1027 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ATG16L1Q676U5 607 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 SYT10Q6XYQ8 523 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 TRAPPC11Q7Z392 1133 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 RASEFQ8IZ41 740 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC30A5Q8TAD4 765 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 TUBB2BQ9BVA1 445 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 TPSD1Q9BZJ3 242 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 C20orf96Q9NUD7 363 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 MAN1B1Q9UKM7 699 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 GUCY2FP51841 1108 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 GRB14Q14449 540 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 PKN1Q16512 942 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 PACS1Q6VY07 963 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KRT222Q8N1A0 295 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ADAM7Q9H2U9 754 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ZFATQ9P243 1243 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 ANAPC2Q9UJX6 822 aa9.45□□□□□ -0.9
LIMCH1-202ENST00000381753 KERAO60938 352 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 GJB5O95377 273 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 EIF3BP55884 814 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 CLEC16AQ2KHT3 1053 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 MANEAQ5SRI9 462 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 ZNF776Q68DI1 518 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 SGMS1Q86VZ5 419 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 TTC7AQ9ULT0 858 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 PRKAB1Q9Y478 270 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 DAAM1Q9Y4D1 1078 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 CLASP2O75122 1294 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 JAK1P23458 1154 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 POU4F1Q01851 419 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 GHRHRQ02643 423 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 OTOAQ7RTW8 1153 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM46DQ8NEK8 389 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 ADAM32Q8TC27 787 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 LRRC8CQ8TDW0 803 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 USP7Q93009 1102 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 GPR174Q9BXC1 333 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 EML4Q9HC35 981 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 HCN2Q9UL51 889 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 SPATA31C2B4DYI2 1134 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 LTFP02788 710 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 ALPPP05187 535 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 NCF2P19878 526 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 CHI3L1P36222 383 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 CBX2Q14781 532 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 TEAD2Q15562 447 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 ENPP7Q6UWV6 458 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 SNIP1Q8TAD8 396 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 OSBPL6Q9BZF3 934 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 GNG14A0A1W2PPG7 69 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 H3BUI4 141 aa9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 VARSP26640 1264 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 CORO1AP31146 461 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-202ENST00000381753 ITGA8P53708 1063 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 717.7 ms