RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 PCDHA11Q9Y5I1 949 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 RASGRF2O14827 1237 aa23.41■■□□□ 1.34
CDX1-201ENST00000231656 EIF3HO15372 352 aaKnown RBP eCLIP23.41■■□□□ 1.34
CDX1-201ENST00000231656 IFRD2Q12894 506 aaPredicted RBP23.41■■□□□ 1.34
CDX1-201ENST00000231656 AUHQ13825 339 aaKnown RBP23.41■■□□□ 1.34
CDX1-201ENST00000231656 DCAF6Q58WW2 860 aa23.41■■□□□ 1.34
CDX1-201ENST00000231656 PPP6R3Q5H9R7 873 aaPredicted RBP23.41■■□□□ 1.34
CDX1-201ENST00000231656 DARS2Q6PI48 645 aaKnown RBP23.41■■□□□ 1.34
CDX1-201ENST00000231656 SPPL3Q8TCT6 385 aa23.41■■□□□ 1.34
CDX1-201ENST00000231656 GPR152Q8TDT2 470 aa23.41■■□□□ 1.34
CDX1-201ENST00000231656 CPT1BQ92523 772 aa23.41■■□□□ 1.34
CDX1-201ENST00000231656 SPATA17Q96L03 361 aa23.41■■□□□ 1.34
CDX1-201ENST00000231656 POPDC2Q9HBU9 364 aa23.41■■□□□ 1.34
CDX1-201ENST00000231656 SMIM23A6NLE4 172 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 RGS16O15492 202 aaPredicted RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 SEC24AO95486 1093 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 CXCL14O95715 111 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 CNPP09543 421 aaKnown RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 CA8P35219 290 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 MDH1P40925 334 aaKnown RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 ERVFC1P60507 584 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 RPL10AP62906 217 aaKnown RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 PITX1P78337 314 aaPredicted RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 SKIDA1Q1XH10 827 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 ZC3H18Q86VM9 953 aaKnown RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 PPIL6Q8IXY8 311 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 NAT8LQ8N9F0 302 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 C9orf72Q96LT7 481 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 TCF25Q9BQ70 676 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 MAGEB5Q9BZ81 275 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 SAYSD1Q9NPB0 183 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 HSFX1Q9UBD0 423 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 TCEA3O75764 348 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 AGTP01019 485 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 LTFP02788 710 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 FYNP06241 537 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 ATF6P18850 670 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 DNAJB1P25685 340 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 STIP1P31948 543 aaKnown RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 TUFMP49411 452 aaKnown RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 GUCY1A3Q02108 690 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 DENND5BQ6ZUT9 1274 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 POF1BQ8WVV4 589 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 USP29Q9HBJ7 922 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 FZD10Q9ULW2 581 aa23.4■■□□□ 1.34
CDX1-201ENST00000231656 YBX2Q9Y2T7 364 aaKnown RBP23.4■■□□□ 1.34
CDX1-201ENST00000231656 PLXNA3P51805 1871 aa23.39■■□□□ 1.34
CDX1-201ENST00000231656 COL4A4P53420 1690 aaPredicted RBP23.39■■□□□ 1.34
CDX1-201ENST00000231656 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.39■■□□□ 1.33
CDX1-201ENST00000231656 H7C0C1 242 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 RB1P06400 928 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 ABHD2P08910 425 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 SLCO1A2P46721 670 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 ATP5OP48047 213 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 USP46P62068 366 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 UBE3AQ05086 875 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 SYPL2Q5VXT5 272 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 ANKRD22Q5VYY1 191 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 B4GALNT4Q76KP1 1039 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 FAM131BQ86XD5 332 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 PSTKQ8IV42 348 aaKnown RBP23.39■■□□□ 1.33
CDX1-201ENST00000231656 RTP4Q96DX8 246 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 SERPINB12Q96P63 405 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 CSPG4P5Q96PW8 444 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 FBXO44Q9H4M3 255 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 CYP4F11Q9HBI6 524 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 ENTPD7Q9NQZ7 604 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 IL37Q9NZH6 218 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 STAP1Q9ULZ2 295 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 IRAK3Q9Y616 596 aa23.39■■□□□ 1.33
CDX1-201ENST00000231656 MYO7AQ13402 2215 aa23.38■■□□□ 1.33
CDX1-201ENST00000231656 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.38■■□□□ 1.33
CDX1-201ENST00000231656 PBX2P40425 430 aa23.38■■□□□ 1.33
CDX1-201ENST00000231656 IFI35P80217 286 aaPredicted RBP23.38■■□□□ 1.33
CDX1-201ENST00000231656 LONRF1Q17RB8 773 aa23.38■■□□□ 1.33
CDX1-201ENST00000231656 TGS1Q96RS0 853 aaKnown RBP23.38■■□□□ 1.33
CDX1-201ENST00000231656 PHACTR1Q9C0D0 580 aa23.38■■□□□ 1.33
CDX1-201ENST00000231656 NAALADL1Q9UQQ1 740 aa23.38■■□□□ 1.33
CDX1-201ENST00000231656 SCML2Q9UQR0 700 aa23.38■■□□□ 1.33
CDX1-201ENST00000231656 HEY1Q9Y5J3 304 aa23.38■■□□□ 1.33
CDX1-201ENST00000231656 BCLAF3A2AJT9 711 aaKnown RBP23.37■■□□□ 1.33
CDX1-201ENST00000231656 ALOX15BO15296 676 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 RDXP35241 583 aaKnown RBP23.37■■□□□ 1.33
CDX1-201ENST00000231656 NRLP54845 237 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 ZSCAN26Q16670 478 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 BSPRYQ5W0U4 402 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 TLR9Q9NR96 1032 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 CWC15Q9P013 229 aaKnown RBP23.37■■□□□ 1.33
CDX1-201ENST00000231656 FAM92AA1XBS5 289 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 CAPN9O14815 690 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 RTN3O95197 1032 aaPredicted RBP23.37■■□□□ 1.33
CDX1-201ENST00000231656 ZFXP17010 805 aaPredicted RBP23.37■■□□□ 1.33
CDX1-201ENST00000231656 LSP1P33241 339 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 FASTKD3Q14CZ7 662 aaKnown RBP23.37■■□□□ 1.33
CDX1-201ENST00000231656 CENPUQ71F23 418 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 GIPC2Q8TF65 315 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 CEP295NLQ96MC4 621 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 TTC25Q96NG3 672 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 SAMD11Q96NU1 681 aa23.37■■□□□ 1.33
CDX1-201ENST00000231656 PBX4Q9BYU1 374 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms