RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 DAB2IPQ5VWQ8 1189 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 LYSMD4Q5XG99 296 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 TCEAL6Q6IPX3 200 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 KIAA1211LQ6NV74 962 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 BEND5Q7L4P6 421 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 RABEPKQ7Z6M1 372 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 TMEFF1Q8IYR6 380 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 ZNF557Q8N988 423 aaPredicted RBP19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 TCEAL3Q969E4 200 aa19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 LSM14BQ9BX40 385 aaKnown RBP19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 TNRC6BQ9UPQ9 1833 aaKnown RBP19.88■□□□□ 0.77
CCDC28A-203ENST00000617445 LNP1A1A4G5 178 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 IGLV3-27P01718 113 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 RPL6Q02878 288 aaKnown RBP19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 NNTQ13423 1086 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 GBP6Q6ZN66 633 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 CEP76Q8TAP6 659 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 WFIKKN2Q8TEU8 576 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 MRGPRX1Q96LB2 322 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 DDX50Q9BQ39 737 aaKnown RBP19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 NUSAP1Q9BXS6 441 aaKnown RBP19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 ACACBO00763 2458 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 LAMA1P25391 3075 aa19.87■□□□□ 0.77
CCDC28A-203ENST00000617445 IGHV1OR15-9A0A0B4J2B8 117 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 SYNCRIPO60506 623 aaKnown RBP19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 HOXD9P28356 352 aaPredicted RBP19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 PTGER3P43115 390 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 TBX4P57082 545 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 ARID5AQ03989 594 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 PEAR1Q5VY43 1037 aaPredicted RBP19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 TRIM65Q6PJ69 517 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 CREBRFQ8IUR6 639 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 FRMD1Q8N878 549 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 ZNF606Q8WXB4 792 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 SERPINB11Q96P15 392 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 TMEM9BQ9NQ34 198 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 ST7Q9NRC1 585 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 PILRBQ9UKJ0 227 aa19.86■□□□□ 0.77
CCDC28A-203ENST00000617445 CKAP5Q14008 2032 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 WASH3PC4AMC7 463 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 PIK3R2O00459 728 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 MSI1O43347 362 aaKnown RBP19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 LETM1O95202 739 aaPredicted RBP19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 NCAM1P13591 858 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 IL12RB1P42701 662 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 IRX4P78413 519 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 TPD52L1Q16890 204 aaPredicted RBP19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 EXOC3L4Q17RC7 722 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 TRIM61Q5EBN2 209 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 SLC23A3Q6PIS1 610 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 TMEM110Q86TL2 294 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 FAM114A1Q8IWE2 563 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 SCUBE3Q8IX30 993 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 MED15Q96RN5 788 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 CRACR2AQ9BSW2 395 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 SLC4A5Q9BY07 1137 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 CIPCQ9C0C6 399 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 MIS12Q9H081 205 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 PRDM16Q9HAZ2 1276 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 APEX2Q9UBZ4 518 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 CLEC4EQ9ULY5 219 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 TLR6Q9Y2C9 796 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 RAD54BQ9Y620 910 aa19.85■□□□□ 0.77
CCDC28A-203ENST00000617445 C4orf47A7E2U8 309 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 THAP12O43422 761 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 ACSL4O60488 711 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 TSPAN3O60637 253 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 NDUFS2O75306 463 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 GNA15P30679 374 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 ZNF33AQ06730 810 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 ZNF234Q14588 700 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 DUOXA1Q1HG43 343 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 FUT11Q495W5 492 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 PIK3R6Q5UE93 754 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 ARMCX6Q7L4S7 300 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 KIAA0907Q7Z7F0 614 aaPredicted RBP19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 IRF2BP1Q8IU81 584 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 CLEC4CQ8WTT0 213 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 FOXJ1Q92949 421 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 FAM149B1Q96BN6 582 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 ZNF419Q96HQ0 510 aaPredicted RBP19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 CLSTN2Q9H4D0 955 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 THAP9Q9H5L6 903 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 DACH1Q9UI36 760 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 CYP8B1Q9UNU6 501 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 PLA2G4CQ9UP65 541 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 ASCC3Q8N3C0 2202 aaKnown RBP19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 CACNA1EQ15878 2313 aa19.84■□□□□ 0.77
CCDC28A-203ENST00000617445 PATE3B3GLJ2 98 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 CALCAP01258 141 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 FYNP06241 537 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 SLC9A1P19634 815 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 ITPKAP23677 461 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 ERCC5P28715 1186 aaPredicted RBP19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 HLA-FP30511 346 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 OXTRP30559 389 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 MTIF2P46199 727 aaKnown RBP19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 DENND1BQ6P3S1 775 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 KIAA1324Q6UXG2 1013 aaKnown RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms