RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 IGLV3-25P01717 112 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 UNGP13051 313 aaPredicted RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 DESP17661 470 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 CHRNB2P17787 502 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 ABCB4P21439 1286 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 TNFAIP3P21580 790 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 MMP8P22894 467 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 CCR1P32246 355 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 PBX1P40424 430 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 PRKCIP41743 596 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 CXCL12P48061 93 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 SULT1E1P49888 294 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 GSCP56915 257 aaPredicted RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 TAF5Q15542 800 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 ZNF528Q3MIS6 628 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 HSF5Q4G112 596 aaPredicted RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 TDRD12Q587J7 1177 aaKnown RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 MMS22LQ6ZRQ5 1243 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 ARCQ7LC44 396 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 TRMT11Q7Z4G4 463 aaKnown RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 C12orf40Q86WS4 652 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 PHF13Q86YI8 300 aaPredicted RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 CCDC117Q8IWD4 279 aaPredicted RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 NAT16Q8N8M0 369 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 HJURPQ8NCD3 748 aaPredicted RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 ADAM32Q8TC27 787 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 BHMTQ93088 406 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 SLC39A13Q96H72 371 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 BTN2A3PQ96KV6 586 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 FCRL2Q96LA5 508 aaPredicted RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 AIPL1Q9NZN9 384 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 ADAM22Q9P0K1 906 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 RAPGEFL1Q9UHV5 662 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 BZW2Q9Y6E2 419 aaKnown RBP13.5□□□□□ -0.25
CLK3-224ENST00000568605 CHD5Q8TDI0 1954 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 WDFY4Q6ZS81 3184 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 SYNJ2BP-COX16A0A087WUM0 186 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 CHURC1-FNTBB4DL54 471 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 H0Y858 1186 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 M0QYT0 321 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 PAPSS2O95340 614 aaPredicted RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 F9P00740 461 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 PENKP01210 267 aaPredicted RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 TNFRSF4P43489 277 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 NRLP54845 237 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 RNASE9P60153 205 aaKnown RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 MRPS21P82921 87 aaKnown RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 ZBED6P86452 979 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 C1QBPQ07021 282 aaKnown RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 KLHL30Q0D2K2 578 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 C10orf76Q5T2E6 689 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 FYB2Q5VWT5 728 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 NAIF1Q69YI7 327 aaPredicted RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 ANKS1BQ7Z6G8 1248 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 CHSY1Q86X52 802 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 RPLP0P6Q8NHW5 317 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 KCNV2Q8TDN2 545 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 SYN2Q92777 582 aaPredicted RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 SLC2A11Q9BYW1 496 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 METTL5Q9NRN9 209 aaKnown RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 PLK2Q9NYY3 685 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 COX16Q9P0S2 106 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 LUC7L2Q9Y383 392 aaKnown RBP13.49□□□□□ -0.25
CLK3-224ENST00000568605 NUP205Q92621 2012 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 THADAQ6YHU6 1953 aa13.49□□□□□ -0.25
CLK3-224ENST00000568605 TBC1D3BA6NDS4 549 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 F5H5T6 163 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 SDC4P31431 198 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 SLC6A11P48066 632 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 SEC13P55735 322 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 NHLH1Q02575 133 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 CSTF1Q05048 431 aaKnown RBP13.48□□□□□ -0.25
CLK3-224ENST00000568605 NME3Q13232 169 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 SLC25A52Q3SY17 297 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 C2CD6Q53TS8 623 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 ZC3H12AQ5D1E8 599 aaKnown RBP13.48□□□□□ -0.25
CLK3-224ENST00000568605 BRMS1LQ5PSV4 323 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 TTC39BQ5VTQ0 682 aaPredicted RBP13.48□□□□□ -0.25
CLK3-224ENST00000568605 SPECC1LQ69YQ0 1117 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 DNAJC24Q6P3W2 148 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 IRF2BP2Q7Z5L9 587 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 C3orf20Q8ND61 904 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 SLC30A5Q8TAD4 765 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 UCMAQ8WVF2 138 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 FAM122AQ96E09 287 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 TMA16Q96EY4 203 aaKnown RBP13.48□□□□□ -0.25
CLK3-224ENST00000568605 PGAP3Q96FM1 320 aaPredicted RBP13.48□□□□□ -0.25
CLK3-224ENST00000568605 NPY6RQ99463 290 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 ANP32EQ9BTT0 268 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 SELENOOQ9BVL4 669 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 HAUS4Q9H6D7 363 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 FBRSL1Q9HCM7 1045 aaKnown RBP13.48□□□□□ -0.25
CLK3-224ENST00000568605 CAPN11Q9UMQ6 739 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 SLC8A2Q9UPR5 921 aa13.48□□□□□ -0.25
CLK3-224ENST00000568605 A0A0A0MRY4 1105 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 KCNU1A8MYU2 1149 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 SP9P0CG40 484 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 HOXD9P28356 352 aaPredicted RBP13.47□□□□□ -0.25
CLK3-224ENST00000568605 SATB1Q01826 763 aa13.47□□□□□ -0.25
CLK3-224ENST00000568605 DEUP1Q05D60 604 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms