RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 INTS7Q9NVH2 962 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 NDUFAF1Q9Y375 327 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 UBDO15205 165 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 CLOCKO15516 846 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 DGAT1O75907 488 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 UBA1P22314 1058 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 RGS7P49802 495 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 TNFAIP8L3Q5GJ75 292 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 BHLHB9Q6PI77 547 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 VCPKMTQ9H867 229 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 TMEM216Q9P0N5 145 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 ERGIC3Q9Y282 383 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 RECQL5O94762 991 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 STOX1Q6ZVD7 989 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 OSGEPL1Q9H4B0 414 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 CHST12Q9NRB3 414 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 NAB2Q15742 525 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 OTUD3Q5T2D3 398 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 RNF44Q7L0R7 432 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 FAM71DQ8N9W8 422 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 PUS7LQ9H0K6 701 aaKnown RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 STOX2Q9P2F5 926 aaPredicted RBP14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 PSME2Q9UL46 239 aa14.26□□□□□ -0.13
CCDC88A-201ENST00000263630 STARD3Q14849 445 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 CLVS1Q8IUQ0 354 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 DEPDC4Q8N2C3 294 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 FSTL5Q8N475 847 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 SGF29Q96ES7 293 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 CST11Q9H112 138 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 RNF146Q9NTX7 359 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 NUDT5Q9UKK9 219 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 ITIH6Q6UXX5 1313 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 OR14I1A6ND48 311 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 LRPAP1P30533 357 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 PIK3CGP48736 1102 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 ALDH7A1P49419 539 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 TBC1D30Q9Y2I9 924 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 EYA4O95677 639 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 PDGFRBP09619 1106 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 SCTRP47872 440 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 AGKQ53H12 422 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 SNIP1Q8TAD8 396 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 NECTIN3Q9NQS3 549 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 BARHL2Q9NY43 387 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 TMEM5Q9Y2B1 443 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 PLB1Q6P1J6 1458 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 OR7A10O76100 309 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 FMO5P49326 533 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 ACTR3P61158 418 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 GOLGA7BQ2TAP0 167 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 JAMLQ86YT9 394 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 AKAP1Q92667 903 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 AFF2P51816 1311 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 PBLDP30039 288 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 PSME3P61289 254 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 PDK2Q15119 407 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 NOTUMQ6P988 496 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 ABCA10Q8WWZ4 1543 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 RAVER2Q9HCJ3 691 aaKnown RBP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 LOC110117498-PIK3R3F6TDL0 507 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 IFNA6P05013 189 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 GHRP10912 638 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 GTF2H1P32780 548 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 MYBPC1Q00872 1141 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 HECTD3Q5T447 861 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 C8orf59Q8N0T1 100 aaPredicted RBP14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 OR6Y1Q8NGX8 325 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 PIK3R3Q92569 461 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 SEPHS2Q99611 448 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 KCNN2Q9H2S1 579 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 RPS6KA6Q9UK32 745 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 CLEC4AQ9UMR7 237 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 CDC42P60953 191 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 LIMD1Q9UGP4 676 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 L1RE1Q9UN81 338 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 ANKRD6Q9Y2G4 727 aa14.25□□□□□ -0.13
CCDC88A-201ENST00000263630 COLGALT2Q8IYK4 626 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 SPEF1Q9Y4P9 236 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 PCDHGB3Q9Y5G1 929 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 RBP3P10745 1247 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 MEA1Q16626 185 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 FNDC5Q8NAU1 212 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ITFG1Q8TB96 612 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 FEZF2Q8TBJ5 459 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ACOT12Q8WYK0 555 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 DLG3Q92796 817 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ZCCHC17Q9NP64 241 aaKnown RBP14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 PLA2G4CQ9UP65 541 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 MROH7Q68CQ1 1323 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 A0A087WWV3 80 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 NCAM2O15394 837 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 SLC26A3P40879 764 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 NME5P56597 212 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 SMU1Q2TAY7 513 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 ERFEQ4G0M1 354 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 BOLA3Q53S33 107 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 WRNIP1Q96S55 665 aa14.24□□□□□ -0.13
CCDC88A-201ENST00000263630 EMC3Q9P0I2 261 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms