RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 DEFB106AQ8N104 65 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 PCDH19Q8TAB3 1148 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 C17orf80Q9BSJ5 609 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 CALCOCO1Q9P1Z2 691 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 USP3Q9Y6I4 520 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 NDC80O14777 642 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 LILRB3O75022 631 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 ACSL3O95573 720 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 ZBED1O96006 694 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 RBP3P10745 1247 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 SLC5A3P53794 718 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 DPYSL2Q16555 572 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 SDHAF4Q5VUM1 108 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 SPRED2Q7Z698 418 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 PLD5Q8N7P1 536 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 SCAMP5Q8TAC9 235 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 RSAD2Q8WXG1 361 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 SHOC2Q9UQ13 582 aa23.45■■□□□ 1.34
CDX1-201ENST00000231656 FARP1Q9Y4F1 1045 aaPredicted RBP23.45■■□□□ 1.34
CDX1-201ENST00000231656 SOAT2O75908 522 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 ABLIM3O94929 683 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 HAPLN1P10915 354 aaPredicted RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 TGM2P21980 687 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 L1CAMP32004 1257 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 RPL22P35268 128 aaKnown RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 MAGOHP61326 146 aaKnown RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 GNGT1P63211 74 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 KYNUQ16719 465 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 SLC25A52Q3SY17 297 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 MGAT5BQ3V5L5 792 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 C6orf118Q5T5N4 469 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 OTUD1Q5VV17 481 aaPredicted RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 PM20D1Q6GTS8 502 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 BNIPLQ7Z465 357 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 SCML4Q8N228 414 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 ZNF461Q8TAF7 563 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 EPS8L3Q8TE67 593 aaKnown RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 P3H4Q92791 437 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 FAM149B1Q96BN6 582 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 SEPT5Q99719 369 aaPredicted RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 GDF15Q99988 308 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 UBE2OQ9C0C9 1292 aaKnown RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 ALG13Q9NP73 1137 aaKnown RBP23.44■■□□□ 1.34
CDX1-201ENST00000231656 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.44■■□□□ 1.34
CDX1-201ENST00000231656 FNIP2Q9P278 1114 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 LZTS1Q9Y250 596 aa23.44■■□□□ 1.34
CDX1-201ENST00000231656 GREB1Q4ZG55 1949 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 A6NNZ2 444 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 YJEFN3A6XGL0 299 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 E7ENQ6 273 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 APOL1O14791 398 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 HPDP32754 393 aaPredicted RBP23.43■■□□□ 1.34
CDX1-201ENST00000231656 YWHAZP63104 245 aaKnown RBP23.43■■□□□ 1.34
CDX1-201ENST00000231656 TUBB8Q3ZCM7 444 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 ARFGAP2Q8N6H7 521 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 CCDC185Q8N715 623 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 PRCCQ92733 491 aaPredicted RBP23.43■■□□□ 1.34
CDX1-201ENST00000231656 NT5C3BQ969T7 300 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 SLC2A13Q96QE2 648 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 RBM15Q96T37 977 aaKnown RBP eCLIP23.43■■□□□ 1.34
CDX1-201ENST00000231656 ROPN1BQ9BZX4 212 aaPredicted RBP23.43■■□□□ 1.34
CDX1-201ENST00000231656 ROPN1Q9HAT0 212 aaPredicted RBP23.43■■□□□ 1.34
CDX1-201ENST00000231656 RXFP1Q9HBX9 757 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 MTMR10Q9NXD2 777 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 AFF4Q9UHB7 1163 aaKnown RBP23.43■■□□□ 1.34
CDX1-201ENST00000231656 SSX2IPQ9Y2D8 614 aa23.43■■□□□ 1.34
CDX1-201ENST00000231656 ZNF638Q14966 1978 aaKnown RBP23.43■■□□□ 1.34
CDX1-201ENST00000231656 CA3P07451 260 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 SULT1E1P49888 294 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 RAB33AQ14088 237 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 TPGS2Q68CL5 300 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 C1orf228Q6PIY5 440 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 LRRC31Q6UY01 552 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 LEKR1Q6ZMV7 388 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 HFE2Q6ZVN8 426 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 BHLHA9Q7RTU4 235 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 PCGF5Q86SE9 256 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 FAM71DQ8N9W8 422 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 STKLD1Q8NE28 680 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 NPY6RQ99463 290 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 AP4E1Q9UPM8 1137 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 MYO16Q9Y6X6 1858 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 CDH23Q9H251 3354 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 TNRC18O15417 2968 aaPredicted RBP23.42■■□□□ 1.34
CDX1-201ENST00000231656 TLDC2A0PJX2 215 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 C5orf67F2Z3F1 127 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 TEX28O15482 410 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 NOS2P35228 1153 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 MAGEA4P43358 317 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 PPP2R2AP63151 447 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 CREMQ03060 361 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 TNFAIP8L3Q5GJ75 292 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 TTC19Q6DKK2 380 aaPredicted RBP23.42■■□□□ 1.34
CDX1-201ENST00000231656 TMC7Q7Z402 723 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 NUP93Q8N1F7 819 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 IRGQQ8WZA9 623 aa23.42■■□□□ 1.34
CDX1-201ENST00000231656 KCTD15Q96SI1 283 aaPredicted RBP23.42■■□□□ 1.34
CDX1-201ENST00000231656 DHX35Q9H5Z1 703 aaKnown RBP23.42■■□□□ 1.34
CDX1-201ENST00000231656 SLC12A6Q9UHW9 1150 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms