RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CACNG3O60359 315 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 GREM1O60565 184 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 TRUB2O95900 331 aaKnown RBP13.53□□□□□ -0.24
CLK3-224ENST00000568605 IGLV3-27P01718 113 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 SLC2A3P11169 496 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 OPRD1P41143 372 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 GABRB2P47870 512 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 GALK1P51570 392 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 CDK17Q00537 523 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 FMO1Q01740 532 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 DCAF6Q58WW2 860 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 FAM102AQ5T9C2 384 aaPredicted RBP13.53□□□□□ -0.24
CLK3-224ENST00000568605 SFMBT2Q5VUG0 894 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 FSTL4Q6MZW2 842 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 ZC3H14Q6PJT7 736 aaKnown RBP13.53□□□□□ -0.24
CLK3-224ENST00000568605 TPGS1Q6ZTW0 290 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 TAC4Q86UU9 113 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 ZNF557Q8N988 423 aaPredicted RBP13.53□□□□□ -0.24
CLK3-224ENST00000568605 PRSS33Q8NF86 280 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 ACDQ96AP0 544 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 CHFRQ96EP1 664 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 SLC2A13Q96QE2 648 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 IRX2Q9BZI1 471 aaPredicted RBP13.53□□□□□ -0.24
CLK3-224ENST00000568605 ARHGEF4Q9NR80 690 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 IFNKQ9P0W0 207 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 DEC1Q9P2X7 70 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 TJP2Q9UDY2 1190 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 FBXO4Q9UKT5 387 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 AGO1Q9UL18 857 aaKnown RBP13.53□□□□□ -0.24
CLK3-224ENST00000568605 NAALADL1Q9UQQ1 740 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 PAXBP1Q9Y5B6 917 aa13.53□□□□□ -0.24
CLK3-224ENST00000568605 MUC22E2RYF6 1773 aaPredicted RBP13.53□□□□□ -0.24
CLK3-224ENST00000568605 A0A1W2PQJ5 194 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 RNF40O75150 1001 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 EGFP01133 1207 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 CYP1A1P04798 512 aaPredicted RBP13.52□□□□□ -0.25
CLK3-224ENST00000568605 CALB1P05937 261 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 FYNP06241 537 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 TYRP14679 529 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 NOS2P35228 1153 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 CENPCQ03188 943 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 KDSRQ06136 332 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 MTAPQ13126 283 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 ADGRF1Q5T601 910 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 GRAMD4Q6IC98 578 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 XYLT1Q86Y38 959 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 TMEM25Q86YD3 366 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 FAM217AQ8IXS0 508 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 DEFB106AQ8N104 65 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 SPEM1Q8N4L4 309 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 CPA5Q8WXQ8 436 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 BAP1Q92560 729 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 AZIN2Q96A70 460 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 PIWIL1Q96J94 861 aaKnown RBP13.52□□□□□ -0.25
CLK3-224ENST00000568605 AGPAT1Q99943 283 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 TTYH3Q9C0H2 523 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 DNAJC17Q9NVM6 304 aaKnown RBP13.52□□□□□ -0.25
CLK3-224ENST00000568605 SLC12A6Q9UHW9 1150 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 ITIH6Q6UXX5 1313 aa13.52□□□□□ -0.25
CLK3-224ENST00000568605 TULP3O75386 442 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 GRAP2O75791 330 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 KAT7O95251 611 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 KLKB1P03952 638 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 TPM1P09493 284 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 GRIA2P42262 883 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 MATKP42679 507 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 DGKGP49619 791 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 TCF15Q12870 199 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 FZD5Q13467 585 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 TRIM14Q14142 442 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 E2F5Q15329 346 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 CLEC16AQ2KHT3 1053 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 GAB4Q2WGN9 574 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 MPPE1Q53F39 396 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 SYPL2Q5VXT5 272 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 MAMSTRQ6ZN01 415 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 Q6ZS52 159 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 SND1Q7KZF4 910 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLK3-224ENST00000568605 VPS36Q86VN1 386 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 ETFBKMTQ8IXQ9 262 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 ATP6V0D2Q8N8Y2 350 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 TERB1Q8NA31 727 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 RNF214Q8ND24 703 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 DDI1Q8WTU0 396 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 ATOH1Q92858 354 aaPredicted RBP13.51□□□□□ -0.25
CLK3-224ENST00000568605 RNF34Q969K3 372 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 C11orf70Q9BRQ4 267 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 FAM126AQ9BYI3 521 aaPredicted RBP13.51□□□□□ -0.25
CLK3-224ENST00000568605 XPO4Q9C0E2 1151 aaKnown RBP13.51□□□□□ -0.25
CLK3-224ENST00000568605 PRMT8Q9NR22 394 aaPredicted RBP13.51□□□□□ -0.25
CLK3-224ENST00000568605 RBM12Q9NTZ6 932 aaKnown RBP13.51□□□□□ -0.25
CLK3-224ENST00000568605 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLK3-224ENST00000568605 DDIT4Q9NX09 232 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLK3-224ENST00000568605 STOML2Q9UJZ1 356 aa13.51□□□□□ -0.25
CLK3-224ENST00000568605 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.51□□□□□ -0.253e-7■■■□□ 15.1
CLK3-224ENST00000568605 ANKRD62A6NC57 917 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 GOLGA8SH3BPF8 625 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 ACSL4O60488 711 aa13.5□□□□□ -0.25
CLK3-224ENST00000568605 MOCS2O96007 188 aaPredicted RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms