RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 CD59P13987 128 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 GTF2H1P32780 548 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 MXI1P50539 228 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 NDUFA8P51970 172 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 YWHAGP61981 247 aaKnown RBP eCLIP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 FAM193AP78312 1265 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 GRIK2Q13002 908 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 E2F5Q15329 346 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 NFIL3Q16649 462 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 ZNF423Q2M1K9 1284 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 PIGZQ86VD9 579 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 ZCCHC9Q8N567 271 aaKnown RBP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 TTC39CQ8N584 583 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 PRCCQ92733 491 aaPredicted RBP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 SIPA1Q96FS4 1042 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 EEF2KMTQ96G04 330 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 P2RY11Q96G91 374 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 TMEM176AQ96HP8 235 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 CAMK1GQ96NX5 476 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 MKRN2Q9H000 416 aaKnown RBP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 THAP10Q9P2Z0 257 aaPredicted RBP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 FBXO10Q9UK96 956 aa13.61□□□□□ -0.23
SF3B3-202ENST00000562722 ASCC3Q8N3C0 2202 aaKnown RBP13.61□□□□□ -0.23
SF3B3-202ENST00000562722 FRYQ5TBA9 3013 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 A0A1B0GTW7 788 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 STX10O60499 249 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 EPHX1P07099 455 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 EPB41P11171 864 aaKnown RBP13.6□□□□□ -0.23
SF3B3-202ENST00000562722 OXTRP30559 389 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 TKTL1P51854 596 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 ZNF132P52740 706 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 ENPEPQ07075 957 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 DPYDQ12882 1025 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 SLC14A1Q13336 389 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 TRIP6Q15654 476 aaKnown RBP13.6□□□□□ -0.23
SF3B3-202ENST00000562722 GOLGA7BQ2TAP0 167 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 TCERG1LQ5VWI1 586 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 SERPINA13PQ6UXR4 307 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 TMPRSS6Q8IU80 811 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 NAXDQ8IW45 347 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 GUF1Q8N442 669 aaKnown RBP13.6□□□□□ -0.23
SF3B3-202ENST00000562722 ZNF276Q8N554 614 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 FBXL13Q8NEE6 735 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 SEMA4DQ92854 862 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 PLD4Q96BZ4 506 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 ARID3AQ99856 593 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 ELOVL2Q9NXB9 296 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 GON4LQ3T8J9 2241 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 ADAMTS9Q9P2N4 1935 aa13.6□□□□□ -0.23
SF3B3-202ENST00000562722 CEP192Q8TEP8 1941 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 ASPMQ8IZT6 3477 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 TSPAN3O60637 253 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 ZBED1O96006 694 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 PRKCHP24723 683 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 HARS2P49590 506 aaKnown RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 TPMTP51580 245 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 RAD23BP54727 409 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 ZNF234Q14588 700 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 EIF4HQ15056 248 aaKnown RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 DCAF17Q5H9S7 520 aaPredicted RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 DCAF12L1Q5VU92 463 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 KRBA2Q6ZNG9 492 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 METTL3Q86U44 580 aaKnown RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 FAM124AQ86V42 546 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 ANKRD52Q8NB46 1076 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 SLC4A11Q8NBS3 891 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 SETD7Q8WTS6 366 aaKnown RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 RNF139Q8WU17 664 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 SORCS1Q8WY21 1168 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 SNX19Q92543 992 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 CCDC34Q96HJ3 373 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 PIWIL1Q96J94 861 aaKnown RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 IPO9Q96P70 1041 aaKnown RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 ULBP1Q9BZM6 244 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 UBXN6Q9BZV1 441 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 ZDHHC5Q9C0B5 715 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 LRRC4Q9HBW1 653 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 ITM2CQ9NQX7 267 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 RAB20Q9NX57 234 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 WSB2Q9NYS7 404 aaPredicted RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 USP36Q9P275 1121 aaKnown RBP13.59□□□□□ -0.23
SF3B3-202ENST00000562722 HESX1Q9UBX0 185 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 CLEC4EQ9ULY5 219 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 PCDH15Q96QU1 1955 aa13.59□□□□□ -0.23
SF3B3-202ENST00000562722 KCNJ18B7U540 433 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 CETN3O15182 167 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 FTH1P19P0C7X4 201 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 CD19P15391 556 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 FNDC3BQ53EP0 1204 aaKnown RBP13.58□□□□□ -0.24
SF3B3-202ENST00000562722 RAB41Q5JT25 222 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 ARHGAP17Q68EM7 881 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 FMNL3Q8IVF7 1028 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 SMYD4Q8IYR2 804 aaPredicted RBP13.58□□□□□ -0.24
SF3B3-202ENST00000562722 SIX6OS1Q8N1H7 587 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 CPXM2Q8N436 756 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 PNPLA1Q8N8W4 532 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 CADM4Q8NFZ8 388 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 NDRG1Q92597 394 aaKnown RBP13.58□□□□□ -0.24
SF3B3-202ENST00000562722 NUP58Q9BVL2 599 aa13.58□□□□□ -0.24
SF3B3-202ENST00000562722 SLC2A11Q9BYW1 496 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms