RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 ITFG2Q969R8 447 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 MRGPRX4Q96LA9 322 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 ABHD1Q96SE0 405 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 GPR20Q99678 358 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 SLC12A9Q9BXP2 914 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 ZNF518BQ9C0D4 1074 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 KLHL4Q9C0H6 718 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 REXO4Q9GZR2 422 aaKnown RBP6.66□□□□□ -1.34
VPS29-210ENST00000552130 PCDHAC1Q9H158 963 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 A1CFQ9NQ94 594 aaKnown RBP6.66□□□□□ -1.34
VPS29-210ENST00000552130 DSEQ9UL01 958 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 PIN4Q9Y237 131 aaKnown RBP6.66□□□□□ -1.34
VPS29-210ENST00000552130 ITM2BQ9Y287 266 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 SQORQ9Y6N5 450 aa6.66□□□□□ -1.34
VPS29-210ENST00000552130 TRAV34A0A0B4J273 112 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 RNF103-CHMP3A0A140T963 221 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 A0A1B0GTL3 188 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 NPIPB15A6NHN6 443 aaPredicted RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 PYCARD-AS1I3L0S3 204 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 SGK1O00141 431 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 RNF103O00237 685 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 IKBKBO14920 756 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 KCNQ3O43525 872 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 AKAP8O43823 692 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 LRG1P02750 347 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 CYBBP04839 570 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 TPOP07202 933 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 DBHP09172 617 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 MYBL1P10243 752 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 CPA1P15085 419 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 FERP16591 822 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 MALP21145 153 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 STIP1P31948 543 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 PPARGP37231 505 aaPredicted RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 ASMTP46597 345 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 HSD17B4P51659 736 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 ADAM17P78536 824 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 MRPS5P82675 430 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 CYP4A11Q02928 519 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 CAMK1Q14012 370 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 ZNF628Q5EBL2 1059 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 USP17L6PQ6QN14 398 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 PAQR3Q6TCH7 311 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 UNQ6494/PRO21346Q6UXR6 183 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 MEX3BQ6ZN04 569 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 KIAA0408Q6ZU52 694 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 PLPPR4Q7Z2D5 763 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 KRT28Q7Z3Y7 464 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 MON1AQ86VX9 555 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 CPNE8Q86YQ8 564 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 WDR63Q8IWG1 891 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS29-210ENST00000552130 GMCL1P1Q8NEA9 526 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 CFAP36Q96G28 342 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 PDLIM5Q96HC4 596 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 VPS50Q96JG6 964 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 C1orf74Q96LT6 269 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 CCDC114Q96M63 670 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 PRAM1Q96QH2 718 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 HEYLQ9NQ87 328 aaPredicted RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 PFDN4Q9NQP4 134 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 RBM12Q9NTZ6 932 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 ZBTB40Q9NUA8 1239 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 DDX43Q9NXZ2 648 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 AATFQ9NY61 560 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS29-210ENST00000552130 MARCH4Q9P2E8 410 aaPredicted RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 SUCLA2Q9P2R7 463 aaPredicted RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 CNOT7Q9UIV1 285 aaKnown RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 ZMYND8Q9ULU4 1186 aaPredicted RBP6.65□□□□□ -1.34
VPS29-210ENST00000552130 PAXBP1Q9Y5B6 917 aa6.65□□□□□ -1.34
VPS29-210ENST00000552130 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.65□□□□□ -1.34
VPS29-210ENST00000552130 CTAGE9A4FU28 777 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 URADA6NGE7 173 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 PSMD14O00487 310 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 TNPO2O14787 897 aaKnown RBP6.64□□□□□ -1.35
VPS29-210ENST00000552130 TSPAN4O14817 238 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 PCDH17O14917 1159 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 SCAMP1O15126 338 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 RTN2O75298 545 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 FTH1P19P0C7X4 201 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 TXNP10599 105 aaKnown RBP6.64□□□□□ -1.35
VPS29-210ENST00000552130 PDHBP11177 359 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 SAT1P21673 171 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 KELP23276 732 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 KLRC1P26715 233 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 SOX8P57073 446 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 TARDBPQ13148 414 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS29-210ENST00000552130 RAB32Q13637 225 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 RAB39AQ14964 217 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 NFIL3Q16649 462 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 TYSND1Q2T9J0 566 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 HSP90AA5PQ58FG0 334 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 GLRA4Q5JXX5 417 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 TTC22Q5TAA0 569 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 NT5DC1Q5TFE4 455 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 PRAMEF9Q5VWM5 478 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 RAP1GAP2Q684P5 730 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 GADL1Q6ZQY3 521 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 SYT13Q7L8C5 426 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 OTOAQ7RTW8 1153 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms