RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FAM124AQ86V42 546 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 TMPRSS12Q86WS5 348 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 ZNF276Q8N554 614 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 JAKMIP2Q96AA8 810 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 SKA1Q96BD8 255 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 NXPE2Q96DL1 559 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 IMPG2Q9BZV3 1241 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 FBRSQ9HAH7 460 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 MAGEF1Q9HAY2 307 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 OSER1Q9NX31 292 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 CLIC5Q9NZA1 410 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 FTSJ1Q9UET6 329 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 STRIP2Q9ULQ0 834 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 PLA2G4CQ9UP65 541 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 ANKRD6Q9Y2G4 727 aa17.77■□□□□ 0.44
VPS29-204ENST00000548259 PCDHGA12O60330 932 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 CD2BP2O95400 341 aaKnown RBP17.76■□□□□ 0.43
VPS29-204ENST00000548259 BNC1Q01954 994 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 STK38Q15208 465 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 KNOP1Q1ED39 458 aaKnown RBP17.76■□□□□ 0.43
VPS29-204ENST00000548259 KIF19Q2TAC6 998 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 FYB2Q5VWT5 728 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 CACUL1Q86Y37 369 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 ARHGAP18Q8N392 663 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 C12orf29Q8N999 325 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 OR2T3Q8NH03 318 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 PARD3BQ8TEW8 1205 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 DCBLD2Q96PD2 775 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 HNRNPABQ99729 332 aaKnown RBP17.76■□□□□ 0.43
VPS29-204ENST00000548259 LHX5Q9H2C1 402 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 NUDT5Q9UKK9 219 aa17.76■□□□□ 0.43
VPS29-204ENST00000548259 MDM4O15151 490 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 C4BPAP04003 597 aaKnown RBP17.75■□□□□ 0.43
VPS29-204ENST00000548259 CORO1AP31146 461 aaKnown RBP17.75■□□□□ 0.43
VPS29-204ENST00000548259 CASP4P49662 377 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 COPAP53621 1224 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 CLDN10P78369 228 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 ZBTB16Q05516 673 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 C6orf118Q5T5N4 469 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 CLEC20AQ6ZU45 233 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 UNC13DQ70J99 1090 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 RSRC2Q7L4I2 434 aaKnown RBP17.75■□□□□ 0.43
VPS29-204ENST00000548259 CCDC186Q7Z3E2 898 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 C1orf216Q8TAB5 229 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 DDI1Q8WTU0 396 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 DHX58Q96C10 678 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 CYFIP2Q96F07 1278 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 C7orf25Q9BPX7 421 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 NT5C1AQ9BXI3 368 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 BTBD1Q9H0C5 482 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 SDCBP2Q9H190 292 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 ZSCAN16Q9H4T2 348 aaPredicted RBP17.75■□□□□ 0.43
VPS29-204ENST00000548259 NMUR1Q9HB89 426 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 TM9SF3Q9HD45 589 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 RASAL2Q9UJF2 1139 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.75■□□□□ 0.43
VPS29-204ENST00000548259 SNX11Q9Y5W9 270 aa17.75■□□□□ 0.43
VPS29-204ENST00000548259 HELZ2Q9BYK8 2649 aaKnown RBP17.75■□□□□ 0.43
VPS29-204ENST00000548259 FAM149AA5PLN7 773 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 LRRIQ3A6PVS8 624 aaPredicted RBP17.74■□□□□ 0.43
VPS29-204ENST00000548259 RRP8O43159 456 aaKnown RBP17.74■□□□□ 0.43
VPS29-204ENST00000548259 KIF20AO95235 890 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 BCAT1P54687 386 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 C21orf59P57076 290 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 SFSWAPQ12872 951 aaKnown RBP17.74■□□□□ 0.43
VPS29-204ENST00000548259 CAMK2BQ13554 666 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 PTPRNQ16849 979 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 C8orf34Q49A92 452 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 TTC31Q49AM3 519 aaPredicted RBP17.74■□□□□ 0.43
VPS29-204ENST00000548259 FNDC3BQ53EP0 1204 aaKnown RBP17.74■□□□□ 0.43
VPS29-204ENST00000548259 FAM173BQ6P4H8 233 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 GPRIN1Q7Z2K8 1008 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 PIWIL1Q96J94 861 aaKnown RBP17.74■□□□□ 0.43
VPS29-204ENST00000548259 USP28Q96RU2 1077 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 GZF1Q9H116 711 aaPredicted RBP17.74■□□□□ 0.43
VPS29-204ENST00000548259 BTBD3Q9Y2F9 522 aa17.74■□□□□ 0.43
VPS29-204ENST00000548259 CELSR3Q9NYQ7 3312 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 SEMA4FO95754 770 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 KLKB1P03952 638 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 DNTTP04053 509 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 HMBSP08397 361 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 JUPP14923 745 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 PRKCHP24723 683 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 CD27P26842 260 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 KIF11P52732 1056 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 ZNF445P59923 1031 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 EFEMP1Q12805 493 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 CAMK2GQ13555 558 aaPredicted RBP17.73■□□□□ 0.43
VPS29-204ENST00000548259 E2F4Q16254 413 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 DHRS13Q6UX07 377 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 CPXM2Q8N436 756 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 CCDC150Q8NCX0 1101 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 LSM14AQ8ND56 463 aaKnown RBP17.73■□□□□ 0.43
VPS29-204ENST00000548259 PIP4K2CQ8TBX8 421 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 ADAM32Q8TC27 787 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 WFIKKN2Q8TEU8 576 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 SLC39A7Q92504 469 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 BAP1Q92560 729 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 GOLGA1Q92805 767 aa17.73■□□□□ 0.43
VPS29-204ENST00000548259 C6orf106Q9H6K1 298 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms