RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 LYSMD4Q5XG99 296 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 TOGARAM2Q6ZUX3 1019 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 RRAGAQ7L523 313 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 ENOSF1Q7L5Y1 443 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 ANKS1BQ7Z6G8 1248 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 RABEPKQ7Z6M1 372 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 SYT12Q8IV01 421 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 FMNL3Q8IVF7 1028 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 UNC45BQ8IWX7 931 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 FAM217AQ8IXS0 508 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 TMEFF1Q8IYR6 380 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 NDRG1Q92597 394 aaKnown RBP9.78□□□□□ -0.84
YBX3-218ENST00000546298 EDEM1Q92611 657 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 TMA16Q96EY4 203 aaKnown RBP9.78□□□□□ -0.84
YBX3-218ENST00000546298 ACOX2Q99424 681 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 DDX50Q9BQ39 737 aaKnown RBP9.78□□□□□ -0.84
YBX3-218ENST00000546298 TRIM62Q9BVG3 475 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 NUSAP1Q9BXS6 441 aaKnown RBP9.78□□□□□ -0.84
YBX3-218ENST00000546298 INTS2Q9H0H0 1204 aaKnown RBP9.78□□□□□ -0.84
YBX3-218ENST00000546298 SMOC1Q9H4F8 434 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 RXFP3Q9NSD7 469 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 CHMP5Q9NZZ3 219 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 CALCOCO1Q9P1Z2 691 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 KIAA1468Q9P260 1216 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 THAP10Q9P2Z0 257 aaPredicted RBP9.78□□□□□ -0.84
YBX3-218ENST00000546298 EVLQ9UI08 416 aaPredicted RBP9.78□□□□□ -0.84
YBX3-218ENST00000546298 RWDD2AQ9UIY3 292 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 HCN2Q9UL51 889 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 STON1Q9Y6Q2 735 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 SPTBN4Q9H254 2564 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 SDK1Q7Z5N4 2213 aa9.78□□□□□ -0.84
YBX3-218ENST00000546298 RNF225M0QZC1 329 aaPredicted RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 TM4SF5O14894 197 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 MED7O43513 233 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 SYNCRIPO60506 623 aaKnown RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 KRT5P13647 590 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 BRD2P25440 801 aaKnown RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 SLC11A2P49281 568 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 RPL6Q02878 288 aaKnown RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 ARID5AQ03989 594 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 MEA1Q16626 185 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 TRIM61Q5EBN2 209 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 ADGRF1Q5T601 910 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 NUGGCQ68CJ6 796 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 SMYD5Q6GMV2 418 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 TCEAL6Q6IPX3 200 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 PMF1Q6P1K2 205 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 MSANTD2Q6P1R3 559 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 BHLHA9Q7RTU4 235 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 METTL3Q86U44 580 aaKnown RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 CREBRFQ8IUR6 639 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 ZNF557Q8N988 423 aaPredicted RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 CEP76Q8TAP6 659 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 WFIKKN2Q8TEU8 576 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 KAT5Q92993 513 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 TCEAL3Q969E4 200 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 PIWIL1Q96J94 861 aaKnown RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 LSM14BQ9BX40 385 aaKnown RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 UBE2TQ9NPD8 197 aaPredicted RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 TMEM9BQ9NQ34 198 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 ELOVL2Q9NXB9 296 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 CACNA2D2Q9NY47 1150 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 SFMBT1Q9UHJ3 866 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 MBD1Q9UIS9 605 aaPredicted RBP9.77□□□□□ -0.85
YBX3-218ENST00000546298 STOML2Q9UJZ1 356 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 CNTN6Q9UQ52 1028 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 DENND4CQ5VZ89 1909 aa9.77□□□□□ -0.85
YBX3-218ENST00000546298 PTPRDP23468 1912 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 ZNF638Q14966 1978 aaKnown RBP9.76□□□□□ -0.85
YBX3-218ENST00000546298 C4orf47A7E2U8 309 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 NDUFS2O75306 463 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 LTFP02788 710 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 PRKCSHP14314 528 aaPredicted RBP9.76□□□□□ -0.85
YBX3-218ENST00000546298 NDUFV2P19404 249 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 PTGER3P43115 390 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 TBX4P57082 545 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 IRX4P78413 519 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 RING1Q06587 406 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 ZNF33AQ06730 810 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 ENPP2Q13822 863 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 CAMK4Q16566 473 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 GEN1Q17RS7 908 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 DUOXA1Q1HG43 343 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 MPP7Q5T2T1 576 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 KIAA1211LQ6NV74 962 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 KIAA1324Q6UXG2 1013 aaKnown RBP9.76□□□□□ -0.85
YBX3-218ENST00000546298 ARMCX6Q7L4S7 300 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 ARHGEF19Q8IW93 802 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 CCDC117Q8IWD4 279 aaPredicted RBP9.76□□□□□ -0.85
YBX3-218ENST00000546298 MLKLQ8NB16 471 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 STK32AQ8WU08 396 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 FOXJ1Q92949 421 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 AZIN2Q96A70 460 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 MRGPRX1Q96LB2 322 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 ZSWIM1Q9BR11 485 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 CIPCQ9C0C6 399 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 ST7Q9NRC1 585 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 PLA2G4CQ9UP65 541 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 RAD54BQ9Y620 910 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 OBSL1O75147 1896 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms