RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 GAD2Q05329 585 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 GRSF1Q12849 480 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS28-210ENST00000529182 PTP4A2Q12974 167 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 CCINQ13939 588 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 ZNF571Q7Z3V5 609 aaPredicted RBP13.92□□□□□ -0.18
VPS28-210ENST00000529182 ZDHHC17Q8IUH5 632 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 SFTPA1Q8IWL2 248 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 MSANTD4Q8NCY6 345 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 PRSS33Q8NF86 280 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 FCRL2Q96LA5 508 aaPredicted RBP13.92□□□□□ -0.18
VPS28-210ENST00000529182 TRIM62Q9BVG3 475 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 FAM204AQ9H8W3 233 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 METTL5Q9NRN9 209 aaKnown RBP13.92□□□□□ -0.18
VPS28-210ENST00000529182 TAS2R14Q9NYV8 317 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 PLK2Q9NYY3 685 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 COX16Q9P0S2 106 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 CAPN11Q9UMQ6 739 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 ZNF510Q9Y2H8 683 aa13.92□□□□□ -0.18
VPS28-210ENST00000529182 ITIH6Q6UXX5 1313 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 GOLGA6L7A0A1B0GV03 622 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 IRAK2O43187 625 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 HOXC11O43248 304 aaPredicted RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 GALR2O43603 387 aaPredicted RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 TSPAN3O60637 253 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 MOCS2O96007 188 aaPredicted RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 IGLV3-25P01717 112 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 TFE3P19532 575 aaPredicted RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 TNFAIP3P21580 790 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 CASP14P31944 242 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 FLT3P36888 993 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 PRKCIP41743 596 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 NSFP46459 744 aaKnown RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 RPS9P46781 194 aaKnown RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 CDK17Q00537 523 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 KDSRQ06136 332 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 KLHL30Q0D2K2 578 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 GAS6Q14393 721 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 ZC3H12AQ5D1E8 599 aaKnown RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 OTUD1Q5VV17 481 aaPredicted RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 TRNP1Q6NT89 227 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 DNAAF5Q86Y56 855 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 VSTM4Q8IW00 320 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 ZNF397Q8NF99 534 aaPredicted RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 SLC39A13Q96H72 371 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 BBS2Q9BXC9 721 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 ADAM33Q9BZ11 813 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 ADAM22Q9P0K1 906 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 CALCOCO1Q9P1Z2 691 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 XPO7Q9UIA9 1087 aaKnown RBP13.91□□□□□ -0.18
VPS28-210ENST00000529182 TLR6Q9Y2C9 796 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 HCN4Q9Y3Q4 1203 aa13.91□□□□□ -0.18
VPS28-210ENST00000529182 DMDP11532 3685 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 TMCO5BA8MYB1 307 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 TULP3O75386 442 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 TYRP14679 529 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 NOS2P35228 1153 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 SCNN1AP37088 669 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 MATKP42679 507 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 SULT1E1P49888 294 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 ZBED6P86452 979 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 RING1Q06587 406 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 MTAPQ13126 283 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 NME3Q13232 169 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 NNTQ13423 1086 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 EIF4EBP2Q13542 120 aaPredicted RBP13.9□□□□□ -0.18
VPS28-210ENST00000529182 LRRC32Q14392 662 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 TDRD12Q587J7 1177 aaKnown RBP13.9□□□□□ -0.18
VPS28-210ENST00000529182 FYB2Q5VWT5 728 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 NUGGCQ68CJ6 796 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 HGSNATQ68CP4 663 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 SPECC1LQ69YQ0 1117 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 NADSYN1Q6IA69 706 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 PKN3Q6P5Z2 889 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 RFWD3Q6PCD5 774 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 MON1BQ7L1V2 547 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 PHF13Q86YI8 300 aaPredicted RBP13.9□□□□□ -0.18
VPS28-210ENST00000529182 UNC45BQ8IWX7 931 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 ETFBKMTQ8IXQ9 262 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 FAM217AQ8IXS0 508 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 EMC1Q8N766 993 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 CHRDQ9H2X0 955 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 SPATA6Q9NWH7 488 aaPredicted RBP13.9□□□□□ -0.18
VPS28-210ENST00000529182 C2orf42Q9NWW7 574 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 DDIT4Q9NX09 232 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.9□□□□□ -0.18
VPS28-210ENST00000529182 MARK1Q9P0L2 795 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 TMEM59LQ9UK28 342 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 LUC7L2Q9Y383 392 aaKnown RBP13.9□□□□□ -0.18
VPS28-210ENST00000529182 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.9□□□□□ -0.188e-7■■□□□ 13.6
VPS28-210ENST00000529182 CACNA1HO95180 2353 aa13.9□□□□□ -0.18
VPS28-210ENST00000529182 M0QYT0 321 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 DDX3XO00571 662 aaKnown RBP eCLIP13.89□□□□□ -0.196e-7■■□□□ 12.4
VPS28-210ENST00000529182 ACSL4O60488 711 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 RNF40O75150 1001 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 PLEKP08567 350 aaPredicted RBP13.89□□□□□ -0.19
VPS28-210ENST00000529182 DRD1P21728 446 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 SLC6A4P31645 630 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 CHKAP35790 457 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 SGSHP51688 502 aa13.89□□□□□ -0.19
VPS28-210ENST00000529182 ATXN1P54253 815 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms