RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 SLC2A11Q9BYW1 496 aa20.26■□□□□ 0.83
USP40-207ENST00000450940 THAP9Q9H5L6 903 aa20.26■□□□□ 0.83
USP40-207ENST00000450940 SFMBT1Q9UHJ3 866 aa20.26■□□□□ 0.83
USP40-207ENST00000450940 CDV3Q9UKY7 258 aaKnown RBP20.26■□□□□ 0.83
USP40-207ENST00000450940 IGLV3-27P01718 113 aa20.25■□□□□ 0.83
USP40-207ENST00000450940 LTFP02788 710 aa20.25■□□□□ 0.83
USP40-207ENST00000450940 ERCC5P28715 1186 aaPredicted RBP20.25■□□□□ 0.83
USP40-207ENST00000450940 ANP32AP39687 249 aaKnown RBP20.25■□□□□ 0.83
USP40-207ENST00000450940 HARS2P49590 506 aaKnown RBP20.25■□□□□ 0.83
USP40-207ENST00000450940 ZNF606Q8WXB4 792 aa20.25■□□□□ 0.83
USP40-207ENST00000450940 BHMTQ93088 406 aa20.25■□□□□ 0.83
USP40-207ENST00000450940 PIWIL1Q96J94 861 aaKnown RBP20.25■□□□□ 0.83
USP40-207ENST00000450940 ACOX2Q99424 681 aa20.25■□□□□ 0.83
USP40-207ENST00000450940 INVSQ9Y283 1065 aa20.25■□□□□ 0.83
USP40-207ENST00000450940 TNRC6BQ9UPQ9 1833 aaKnown RBP20.25■□□□□ 0.83
USP40-207ENST00000450940 BCLAF3A2AJT9 711 aaKnown RBP20.24■□□□□ 0.83
USP40-207ENST00000450940 BECN2A8MW95 431 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 SLC30A4O14863 429 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 CYBBP04839 570 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 FYNP06241 537 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 KRT5P13647 590 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 HOXB2P14652 356 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 BCKDHBP21953 392 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 PON1P27169 355 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 MPLP40238 635 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 ZNF445P59923 1031 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 EXOC3L4Q17RC7 722 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 MAP7D1Q3KQU3 841 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 DPCR1Q3MIW9 517 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 BEND5Q7L4P6 421 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 CLEC4CQ8WTT0 213 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 SHC3Q92529 594 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 SLC4A5Q9BY07 1137 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 IRX2Q9BZI1 471 aaPredicted RBP20.24■□□□□ 0.83
USP40-207ENST00000450940 VPS45Q9NRW7 570 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 LMBRD1Q9NUN5 540 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 APEX2Q9UBZ4 518 aa20.24■□□□□ 0.83
USP40-207ENST00000450940 CEP192Q8TEP8 1941 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 LAMA1P25391 3075 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 TCRBV21S2A2A0A5A6 115 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 PIK3R2O00459 728 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 NPC1O15118 1278 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 MED7O43513 233 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 GABRG2P18507 467 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 GBP1P32455 592 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 ACADSBP45954 432 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 LIMK1P53667 647 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 RING1Q06587 406 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 ENPP2Q13822 863 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 BYSLQ13895 437 aaKnown RBP20.23■□□□□ 0.83
USP40-207ENST00000450940 SF3A2Q15428 464 aaKnown RBP20.23■□□□□ 0.83
USP40-207ENST00000450940 MPPE1Q53F39 396 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 CT47A1Q5JQC4 288 aaPredicted RBP20.23■□□□□ 0.83
USP40-207ENST00000450940 ADGRF1Q5T601 910 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 SDE2Q6IQ49 451 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 DENND1BQ6P3S1 775 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 GJB7Q6PEY0 223 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 TMEM110Q86TL2 294 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 CREBRFQ8IUR6 639 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 SCUBE3Q8IX30 993 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 CHPFQ8IZ52 775 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 HMGB4Q8WW32 186 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 AZIN2Q96A70 460 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 NUP62CLQ9H1M0 184 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 CLEC4EQ9ULY5 219 aa20.23■□□□□ 0.83
USP40-207ENST00000450940 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.22■□□□□ 0.83
USP40-207ENST00000450940 SART1O43290 800 aaKnown RBP20.22■□□□□ 0.83
USP40-207ENST00000450940 MSI1O43347 362 aaKnown RBP20.22■□□□□ 0.83
USP40-207ENST00000450940 GDF9O60383 454 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 LETM1O95202 739 aaPredicted RBP20.22■□□□□ 0.83
USP40-207ENST00000450940 WASP42768 502 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 MTIF2P46199 727 aaKnown RBP20.22■□□□□ 0.83
USP40-207ENST00000450940 APBA1Q02410 837 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 MAN2A1Q16706 1144 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 GEN1Q17RS7 908 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 SPDYCQ5MJ68 293 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 RNF43Q68DV7 783 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 FAM114A1Q8IWE2 563 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 IPO4Q8TEX9 1081 aaKnown RBP20.22■□□□□ 0.83
USP40-207ENST00000450940 DDI1Q8WTU0 396 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 RLN3Q8WXF3 142 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 MIS12Q9H081 205 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 SIX2Q9NPC8 291 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 BCCIPQ9P287 314 aaKnown RBP eCLIP20.22■□□□□ 0.83
USP40-207ENST00000450940 DACH1Q9UI36 760 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 CYTH4Q9UIA0 394 aa20.22■□□□□ 0.83
USP40-207ENST00000450940 HOXD9P28356 352 aaPredicted RBP20.21■□□□□ 0.83
USP40-207ENST00000450940 GNA15P30679 374 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 NNTQ13423 1086 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 CCDC6Q16204 474 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 TPD52L1Q16890 204 aaPredicted RBP20.21■□□□□ 0.83
USP40-207ENST00000450940 NUGGCQ68CJ6 796 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 KIAA1211LQ6NV74 962 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 DPY19L2P1Q6NXN4 242 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 UNC45BQ8IWX7 931 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 GOLGA1Q92805 767 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 SPACA7Q96KW9 195 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 ACP6Q9NPH0 428 aa20.21■□□□□ 0.83
USP40-207ENST00000450940 THAP10Q9P2Z0 257 aaPredicted RBP20.21■□□□□ 0.83
USP40-207ENST00000450940 MBD1Q9UIS9 605 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms