RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 GID8Q9NWU2 228 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 GLTPD2A6NH11 291 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 RARAP10276 462 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 ALDH18A1P54886 795 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 TBX4P57082 545 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 XRCC4Q13426 336 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 ITGA9Q13797 1035 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 NUMA1Q14980 2115 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 PTRHD1Q6GMV3 140 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 IRF2BP1Q8IU81 584 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 MYCBPAPQ8TBZ2 947 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 FGD4Q96M96 766 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 HOXB8P17481 243 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 PTPN1P18031 435 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 HTR7P34969 479 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 GRAMD1BQ3KR37 738 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 TRAPPC12Q8WVT3 735 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 NSL1Q96IY1 281 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 CDT1Q9H211 546 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 TMCO1Q9UM00 188 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 PCDHGC3Q9UN70 934 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 PHF20L1A8MW92 1017 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 CLASP2O75122 1294 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 UPP2O95045 317 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 CCND1P24385 295 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 CDK7P50613 346 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 NAA20P61599 178 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 MROH9Q5TGP6 573 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 ALLCQ8N6M5 410 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 COLGALT1Q8NBJ5 622 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 FAM161BQ96MY7 647 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 PCDHA2Q9Y5H9 948 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 E5RJQ4 531 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 ANP32DO95626 131 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 HSPA1AP0DMV8 641 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 HSPA1BP0DMV9 641 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 STMN1P16949 149 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 SH3D19Q5HYK7 790 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 KYAT3Q6YP21 454 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 RPRD1AQ96P16 312 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 ENTPD7Q9NQZ7 604 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 TRMT6Q9UJA5 497 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 ATP9AO75110 1047 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 RBP1P09455 135 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 GRIK3Q13003 919 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 METTL3Q86U44 580 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 RIN2Q8WYP3 895 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 ACSF2Q96CM8 615 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 NMRK1Q9NWW6 199 aa11.88□□□□□ -0.51
PTCH1-208ENST00000430669 DMGDHQ9UI17 866 aaKnown RBP11.88□□□□□ -0.51
PTCH1-208ENST00000430669 LTBP4Q8N2S1 1624 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 C9orf57Q5W0N0 161 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 DDX53Q86TM3 631 aaKnown RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 FNIP1Q8TF40 1166 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 RXFP1Q9HBX9 757 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 PRG3Q9Y2Y8 225 aaPredicted RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 MTA2O94776 668 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 ZNF844Q08AG5 666 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 MGAT5Q09328 741 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 PSTKQ8IV42 348 aaKnown RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 TEX9Q8N6V9 391 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 SENP8Q96LD8 212 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 GLI3P10071 1580 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 SUPT3HB4E1H0 165 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 SUPT3HO75486 399 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 LTFP02788 710 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 YWHAQP27348 245 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 PTP4A2Q12974 167 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 PRPF39Q86UA1 669 aaKnown RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 RSPH1Q8WYR4 309 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 THOC1Q96FV9 657 aaKnown RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 STRA8Q7Z7C7 330 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 WNT8BQ93098 351 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 RCOR3Q9P2K3 495 aaPredicted RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 PTCH2Q9Y6C5 1203 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 RGMBQ6NW40 437 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 TMEM139Q8IV31 216 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 NCLNQ969V3 563 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 COL11A1P12107 1806 aaPredicted RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 ZNF862O60290 1169 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 NOL4O94818 638 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 ENO1P06733 434 aaKnown RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 IRF1P10914 325 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 FAM131BQ86XD5 332 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 L3MBTL3Q96JM7 780 aaPredicted RBP11.87□□□□□ -0.51
PTCH1-208ENST00000430669 SLC39A10Q9ULF5 831 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 SNCAIPQ9Y6H5 919 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 MICAL3Q7RTP6 2002 aa11.87□□□□□ -0.51
PTCH1-208ENST00000430669 XPO1O14980 1071 aaKnown RBP11.86□□□□□ -0.51
PTCH1-208ENST00000430669 PMPCBO75439 489 aa11.86□□□□□ -0.51
PTCH1-208ENST00000430669 HMBSP08397 361 aa11.86□□□□□ -0.51
PTCH1-208ENST00000430669 EMC1Q8N766 993 aa11.86□□□□□ -0.51
PTCH1-208ENST00000430669 LNX1Q8TBB1 728 aaPredicted RBP11.86□□□□□ -0.51
PTCH1-208ENST00000430669 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.86□□□□□ -0.51
PTCH1-208ENST00000430669 DNPEPQ9ULA0 475 aa11.86□□□□□ -0.51
PTCH1-208ENST00000430669 C4BPAP04003 597 aaKnown RBP11.86□□□□□ -0.51
PTCH1-208ENST00000430669 FECHP22830 423 aa11.86□□□□□ -0.51
PTCH1-208ENST00000430669 PURBQ96QR8 312 aaKnown RBP11.86□□□□□ -0.51
PTCH1-208ENST00000430669 MAP2K7O14733 419 aa11.86□□□□□ -0.51
PTCH1-208ENST00000430669 DENND1BQ6P3S1 775 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms