RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SERPINB11Q96P15 392 aa19.32■□□□□ 0.68
CLN3-206ENST00000360019 DYNC1I1O14576 645 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 COILP38432 576 aaPredicted RBP19.31■□□□□ 0.68
CLN3-206ENST00000360019 EPHB3P54753 998 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 PLD1Q13393 1074 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 ANKRD20A8PQ5CZ79 823 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 EFHC2Q5JST6 749 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 SNX30Q5VWJ9 437 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 CCDC137Q6PK04 289 aaKnown RBP19.31■□□□□ 0.68
CLN3-206ENST00000360019 DNAJB7Q7Z6W7 309 aaPredicted RBP19.31■□□□□ 0.68
CLN3-206ENST00000360019 PQLC3Q8N755 202 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 KREMEN2Q8NCW0 462 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 PCDH19Q8TAB3 1148 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 MICAL1Q8TDZ2 1067 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 HAUS1Q96CS2 278 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 HINFPQ9BQA5 517 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 PARD6BQ9BYG5 372 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 CCSER2Q9H7U1 834 aa19.31■□□□□ 0.68
CLN3-206ENST00000360019 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.31■□□□□ 0.68
CLN3-206ENST00000360019 SAE1Q9UBE0 346 aaPredicted RBP19.31■□□□□ 0.68
CLN3-206ENST00000360019 TARSL2A2RTX5 802 aaKnown RBP19.3■□□□□ 0.68
CLN3-206ENST00000360019 ZNF840PA6NDX5 716 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 ZNF487B1APH4 448 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 H0YGN5 161 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 TLR5O60602 858 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 GLUD1P00367 558 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 KCNJ1P48048 391 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 CLCN4P51793 760 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 EFEMP1Q12805 493 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 SNX1Q13596 522 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 CCNG2Q16589 344 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 CCDC70Q6NSX1 233 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 PDZD8Q8NEN9 1154 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 RNF34Q969K3 372 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 ZNF512Q96ME7 567 aaPredicted RBP19.3■□□□□ 0.68
CLN3-206ENST00000360019 CSPG4P5Q96PW8 444 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 CERS4Q9HA82 394 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 OLA1Q9NTK5 396 aaKnown RBP19.3■□□□□ 0.68
CLN3-206ENST00000360019 ARHGEF38Q9NXL2 777 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 CWC15Q9P013 229 aaKnown RBP19.3■□□□□ 0.68
CLN3-206ENST00000360019 PCYOX1Q9UHG3 505 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 FAM72CH0Y354 149 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 H3BNC9 293 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 TTI1O43156 1089 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 C8AP07357 584 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 GOT1P17174 413 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 FNTAP49354 379 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 GPM6BQ13491 265 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 TAF12Q16514 161 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 ARL13BQ3SXY8 428 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 C10orf120Q5SQS8 335 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 FAM72AQ5TYM5 149 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 FAM72DQ6L9T8 149 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 FAM72BQ86X60 149 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 SLC39A13Q96H72 371 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 MAK16Q9BXY0 300 aaKnown RBP19.3■□□□□ 0.68
CLN3-206ENST00000360019 ZNF334Q9HCZ1 680 aaPredicted RBP19.3■□□□□ 0.68
CLN3-206ENST00000360019 STIM2Q9P246 746 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 TLR6Q9Y2C9 796 aa19.3■□□□□ 0.68
CLN3-206ENST00000360019 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.29■□□□□ 0.68
CLN3-206ENST00000360019 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.29■□□□□ 0.68
CLN3-206ENST00000360019 ZSCAN5CA6NGD5 496 aaPredicted RBP19.29■□□□□ 0.68
CLN3-206ENST00000360019 ZMYND10O75800 440 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 PECAM1P16284 738 aaPredicted RBP19.29■□□□□ 0.68
CLN3-206ENST00000360019 CCR1P32246 355 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 PTGIRP43119 386 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 DR1Q01658 176 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 SEMA3BQ13214 749 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 PPP2R5DQ14738 602 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 BRMS1LQ5PSV4 323 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 SLC9A4Q6AI14 798 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 CCDC26Q8TAB7 109 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 NKX2-4Q9H2Z4 354 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 HOMER3Q9NSC5 361 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 SNX10Q9Y5X0 201 aa19.29■□□□□ 0.68
CLN3-206ENST00000360019 APOC4-APOC2K7ER74 178 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 LIASO43766 372 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 HEXIM1O94992 359 aaKnown RBP19.28■□□□□ 0.68
CLN3-206ENST00000360019 APOC2P02655 101 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 VSNL1P62760 191 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 TFDP2Q14188 446 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 CCDC149Q6ZUS6 474 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 MAATS1Q7Z4T9 603 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 TMEM150AQ86TG1 271 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 MIB1Q86YT6 1006 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 ZNF276Q8N554 614 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 PLD5Q8N7P1 536 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 ACTL9Q8TC94 416 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.28■□□□□ 0.68
CLN3-206ENST00000360019 FCRL2Q96LA5 508 aaPredicted RBP19.28■□□□□ 0.68
CLN3-206ENST00000360019 TRPM5Q9NZQ8 1165 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 MARCH2Q9P0N8 246 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 RCOR3Q9P2K3 495 aaPredicted RBP19.28■□□□□ 0.68
CLN3-206ENST00000360019 RASAL2Q9UJF2 1139 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 DNPEPQ9ULA0 475 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 SZT2Q5T011 3432 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 KCNU1A8MYU2 1149 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 CREB3O43889 395 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 LPXNO60711 386 aa19.28■□□□□ 0.68
CLN3-206ENST00000360019 GGCXP38435 758 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms