RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ULBP1Q9BZM6 244 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 PHACTR1Q9C0D0 580 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 NRDE2Q9H7Z3 1164 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 AAASQ9NRG9 546 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 BCCIPQ9P287 314 aaKnown RBP eCLIP17.5■□□□□ 0.39
LDLR-206ENST00000557958 TANC1Q9C0D5 1861 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 ABHD14A-ACY1A0A1B0GW23 586 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 NT5C1B-RDH14C9J2C7 533 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 TADA2AO75478 443 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 AMHP03971 560 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 IVLP07476 585 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 ZSCAN5DPP0CG00 497 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 TFE3P19532 575 aaPredicted RBP17.49■□□□□ 0.39
LDLR-206ENST00000557958 CYP2F1P24903 491 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 PBX3P40426 434 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 DEFB103AP81534 67 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 SKOR1P84550 965 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 RNASEH2BQ5TBB1 312 aaKnown RBP17.49■□□□□ 0.39
LDLR-206ENST00000557958 LEKR1Q6ZMV7 388 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 BZW1Q7L1Q6 419 aaKnown RBP17.49■□□□□ 0.39
LDLR-206ENST00000557958 SCML4Q8N228 414 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 SH2D3CQ8N5H7 860 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 RBM15Q96T37 977 aaKnown RBP eCLIP17.49■□□□□ 0.396e-8■■■■■ 27.6
LDLR-206ENST00000557958 SLC9A7Q96T83 725 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 RTP3Q9BQQ7 232 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 CCDC77Q9BR77 488 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 CAPS2Q9BXY5 557 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 ADAM7Q9H2U9 754 aa17.49■□□□□ 0.39
LDLR-206ENST00000557958 M0QYT0 321 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 LTFP02788 710 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 ALDH2P05091 517 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 IL4RP24394 825 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 DEUP1Q05D60 604 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 C1orf228Q6PIY5 440 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 CD300LGQ6UXG3 332 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 C4orf22Q6V702 233 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 CENPUQ71F23 418 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 CDKL3Q8IVW4 592 aaPredicted RBP17.48■□□□□ 0.39
LDLR-206ENST00000557958 FAM71DQ8N9W8 422 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 GLIS1Q8NBF1 620 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 NRP1O14786 923 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 RASGRF2O14827 1237 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 RGS16O15492 202 aaPredicted RBP17.48■□□□□ 0.39
LDLR-206ENST00000557958 ACSL3O95573 720 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 F9P00740 461 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 SHBGP04278 402 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 ETS1P14921 441 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 ATP5DP30049 168 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 NDUFV1P49821 464 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 XRCC4Q13426 336 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 CA9Q16790 459 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 EFHC2Q5JST6 749 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 SPOUT1Q5T280 376 aaKnown RBP17.48■□□□□ 0.39
LDLR-206ENST00000557958 ZC3H18Q86VM9 953 aaKnown RBP17.48■□□□□ 0.39
LDLR-206ENST00000557958 FAM131BQ86XD5 332 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 SPATA2LQ8IUW3 424 aaPredicted RBP17.48■□□□□ 0.39
LDLR-206ENST00000557958 PQLC3Q8N755 202 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 ZMIZ2Q8NF64 920 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 PCDH19Q8TAB3 1148 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 KCNK16Q96T55 309 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 FZD10Q9ULW2 581 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 HEY1Q9Y5J3 304 aa17.48■□□□□ 0.39
LDLR-206ENST00000557958 TSC2P49815 1807 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.47■□□□□ 0.39
LDLR-206ENST00000557958 BCLAF3A2AJT9 711 aaKnown RBP17.47■□□□□ 0.39
LDLR-206ENST00000557958 H3BRJ5 948 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 SHOX2O60902 331 aaPredicted RBP17.47■□□□□ 0.39
LDLR-206ENST00000557958 ZNF189O75820 626 aaPredicted RBP17.47■□□□□ 0.39
LDLR-206ENST00000557958 BDNFP23560 247 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 DNAJC21Q5F1R6 531 aaKnown RBP17.47■□□□□ 0.39
LDLR-206ENST00000557958 BNIPLQ7Z465 357 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 PRUNE1Q86TP1 453 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 CEP57Q86XR8 500 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 UNC45BQ8IWX7 931 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 DCP1BQ8IZD4 617 aaKnown RBP17.47■□□□□ 0.39
LDLR-206ENST00000557958 CRIPAKQ8N1N5 446 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 CCDC185Q8N715 623 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 PKMYT1Q99640 499 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 IL23AQ9NPF7 189 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 PAK5Q9P286 719 aa17.47■□□□□ 0.39
LDLR-206ENST00000557958 ZMYND8Q9ULU4 1186 aaPredicted RBP17.47■□□□□ 0.39
LDLR-206ENST00000557958 HHLA1C9JL84 531 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 AGTP01019 485 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 FGBP02675 491 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 ABHD2P08910 425 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 NCAM1P13591 858 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 RPL22P35268 128 aaKnown RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 MAGEA4P43358 317 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 GDF10P55107 478 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 ARL4CP56559 192 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 WDR5P61964 334 aaKnown RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 ARL13BQ3SXY8 428 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 NPNTQ6UXI9 565 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 PPP1R21Q6ZMI0 780 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 SLC7A14Q8TBB6 771 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 PRCCQ92733 491 aaPredicted RBP17.46■□□□□ 0.39
LDLR-206ENST00000557958 DPF3Q92784 378 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 TOP1MTQ969P6 601 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 NTAN1Q96AB6 310 aa17.46■□□□□ 0.39
LDLR-206ENST00000557958 PGAP3Q96FM1 320 aaPredicted RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms