RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TBCCQ15814 346 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 CYP1B1Q16678 543 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 LRRC24Q50LG9 513 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 GPR149Q86SP6 731 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 ZNF276Q8N554 614 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 FAM71DQ8N9W8 422 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 TOR1AIP2Q8NFQ8 470 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 LINS1Q8NG48 757 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 SLC2A12Q8TD20 617 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 UCMAQ8WVF2 138 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 XAGE5Q8WWM1 108 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 PTCD3Q96EY7 689 aaKnown RBP8.27□□□□□ -1.09
NUP54-215ENST00000514313 KLC2Q9H0B6 622 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 DEF6Q9H4E7 631 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 PARD6AQ9NPB6 346 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 TMLHEQ9NVH6 421 aa8.27□□□□□ -1.09
NUP54-215ENST00000514313 TRPC5Q9UL62 973 aaPredicted RBP8.27□□□□□ -1.09
NUP54-215ENST00000514313 DYTNA2CJ06 578 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 MUSKO15146 869 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 KLK10O43240 276 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 CA12O43570 354 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 TSPAN3O60637 253 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 IL6RP08887 468 aaPredicted RBP8.26□□□□□ -1.09
NUP54-215ENST00000514313 CSF1P09603 554 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 CPA1P15085 419 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 GKP32189 559 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 NXPH1P58417 271 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 SLC25A3Q00325 362 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 DCTN1Q14203 1278 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 PRKD1Q15139 912 aaPredicted RBP8.26□□□□□ -1.09
NUP54-215ENST00000514313 TBRG1Q3YBR2 411 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 ZNF618Q5T7W0 954 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 TEDDM1Q5T9Z0 273 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 ACAD10Q6JQN1 1059 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 C16orf89Q6UX73 402 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 RAB11FIP4Q86YS3 637 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.26□□□□□ -1.09
NUP54-215ENST00000514313 CTHRC1Q96CG8 243 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 PRR25Q96S07 402 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 HERC2P3Q9BVR0 1158 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 ARHGAP39Q9C0H5 1083 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 SERHL2Q9H4I8 314 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 AURKAIP1Q9NWT8 199 aaPredicted RBP8.26□□□□□ -1.09
NUP54-215ENST00000514313 CEP72Q9P209 647 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 DKK3Q9UBP4 350 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 AASSQ9UDR5 926 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 BAG5Q9UL15 447 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 ASAP1Q9ULH1 1129 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 HSF4Q9ULV5 492 aa8.26□□□□□ -1.09
NUP54-215ENST00000514313 AGAP5A6NIR3 686 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 VWC2LB2RUY7 222 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 PROM1O43490 865 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 LPXNO60711 386 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 PMPCBO75439 489 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 RPL15P61313 204 aaKnown RBP8.25□□□□□ -1.09
NUP54-215ENST00000514313 DEUP1Q05D60 604 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 GALNT2Q10471 571 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 CCDC30Q5VVM6 783 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 VWA1Q6PCB0 445 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 FSIP1Q8NA03 581 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 RFFLQ8WZ73 363 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 CENPIQ92674 756 aaPredicted RBP8.25□□□□□ -1.09
NUP54-215ENST00000514313 STAMQ92783 540 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 MYEOVQ96EZ4 313 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 RBM17Q96I25 401 aaKnown RBP8.25□□□□□ -1.09
NUP54-215ENST00000514313 FAR2Q96K12 515 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 ACAD9Q9H845 621 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 RXFP3Q9NSD7 469 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 PCDHB2Q9Y5E7 798 aa8.25□□□□□ -1.09
NUP54-215ENST00000514313 CCDC187A0A096LP49 1063 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 MBD3L5A6NJ08 208 aaPredicted RBP8.24□□□□□ -1.09
NUP54-215ENST00000514313 TMEM200CA6NKL6 621 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 NKX2-8O15522 239 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 LAG3P18627 525 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 CASP6P55212 293 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 RBM6P78332 1123 aaKnown RBP8.24□□□□□ -1.09
NUP54-215ENST00000514313 GUCY1B3Q02153 619 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 FZD5Q13467 585 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 L1TD1Q5T7N2 865 aaKnown RBP8.24□□□□□ -1.09
NUP54-215ENST00000514313 ANO7Q6IWH7 933 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 CFAP161Q6P656 301 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 C4orf50Q6ZRC1 276 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 LNX2Q8N448 690 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 IL17DQ8TAD2 202 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 PRR11Q96HE9 360 aaPredicted RBP8.24□□□□□ -1.09
NUP54-215ENST00000514313 LOXL4Q96JB6 756 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 VPS50Q96JG6 964 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 CHCHD6Q9BRQ6 235 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 SAP30LQ9HAJ7 183 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 OLA1Q9NTK5 396 aaKnown RBP8.24□□□□□ -1.09
NUP54-215ENST00000514313 TBC1D22BQ9NU19 505 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 TBCCD1Q9NVR7 557 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 PCDHA10Q9Y5I2 948 aa8.24□□□□□ -1.09
NUP54-215ENST00000514313 SAC3D1A6NKF1 404 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 RTN3O95197 1032 aaPredicted RBP8.23□□□□□ -1.09
NUP54-215ENST00000514313 CHRM2P08172 466 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 CREB1P16220 341 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 ADRA1DP25100 572 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 CTGFP29279 349 aa8.23□□□□□ -1.09
NUP54-215ENST00000514313 DCAF7P61962 342 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms