RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NAALADL1Q9UQQ1 740 aa9.67□□□□□ -0.86
VPS35-206ENST00000565228 TCRBV5S1A1TA0A578 114 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 GFRA2O00451 464 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 ZNF263O14978 683 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 GRAP2O75791 330 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 GYPCP04921 128 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 CYP17A1P05093 508 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 HMBSP08397 361 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 PLEKP08567 350 aaPredicted RBP9.66□□□□□ -0.86
VPS35-206ENST00000565228 SKILP12757 684 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 OPRD1P41143 372 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 SLC6A11P48066 632 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 UBASH3AP57075 661 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 ARID5AQ03989 594 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 PTK2Q05397 1052 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 STILQ15468 1287 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 MEA1Q16626 185 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 HGSNATQ68CP4 663 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 PKN3Q6P5Z2 889 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 RHBDF2Q6PJF5 856 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 TPRG1Q6ZUI0 275 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 MIB1Q86YT6 1006 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 CCDC105Q8IYK2 499 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 ADGRG2Q8IZP9 1017 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 SLC30A5Q8TAD4 765 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 ADAM32Q8TC27 787 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 STK32AQ8WU08 396 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 OSCP1Q8WVF1 389 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 PBXIP1Q96AQ6 731 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 FAM81BQ96LP2 452 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 ECT2Q9H8V3 914 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 TRPV5Q9NQA5 729 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 RBM12Q9NTZ6 932 aaKnown RBP9.66□□□□□ -0.86
VPS35-206ENST00000565228 XPO7Q9UIA9 1087 aaKnown RBP9.66□□□□□ -0.86
VPS35-206ENST00000565228 HCN2Q9UL51 889 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 CLEC4EQ9ULY5 219 aa9.66□□□□□ -0.86
VPS35-206ENST00000565228 PRR33A8MZF0 331 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 SPECC1L-ADORA2AF8WAN1 911 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 DPYSL4O14531 572 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 SERPINC1P01008 464 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 IGLV3-25P01717 112 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 IGLV3-27P01718 113 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 LTFP02788 710 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 DCNP07585 359 aaKnown RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 PFKLP17858 780 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 RFX1P22670 979 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 CTHP32929 405 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 GJA4P35212 333 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 ATP5C1P36542 298 aaKnown RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 STAT1P42224 750 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 GABRB2P47870 512 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 MRE11P49959 708 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 SGSHP51688 502 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 ATXN1P54253 815 aaKnown RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 CDR2Q01850 454 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 RUNX3Q13761 415 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 ARHGAP29Q52LW3 1261 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 TMEM31Q5JXX7 168 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 C10orf120Q5SQS8 335 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 NAA35Q5VZE5 725 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 NADSYN1Q6IA69 706 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 FSTL4Q6MZW2 842 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 MSANTD2Q6P1R3 559 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 KLHDC10Q6PID8 442 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 ZNF571Q7Z3V5 609 aaPredicted RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 TAC4Q86UU9 113 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 XYLT1Q86Y38 959 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 TMEM25Q86YD3 366 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 MAML2Q8IZL2 1156 aaPredicted RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 PHTF2Q8N3S3 785 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 FLCNQ8NFG4 579 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 DQX1Q8TE96 717 aaKnown RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 DNASE1L2Q92874 299 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 PPP1R13BQ96KQ4 1090 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 FCRL2Q96LA5 508 aaPredicted RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 PCMTD1Q96MG8 357 aaPredicted RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 SLC2A13Q96QE2 648 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 KIF9Q9HAQ2 790 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 LTB4R2Q9NPC1 389 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 ST7Q9NRC1 585 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 DUS2Q9NX74 493 aaKnown RBP9.65□□□□□ -0.86
VPS35-206ENST00000565228 EHD2Q9NZN4 543 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 RASAL2Q9UJF2 1139 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 FBXL21Q9UKT6 434 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 PIAS3Q9Y6X2 628 aa9.65□□□□□ -0.86
VPS35-206ENST00000565228 CACNA1HO95180 2353 aa9.65□□□□□ -0.87
VPS35-206ENST00000565228 DNAH14Q0VDD8 3507 aa9.65□□□□□ -0.87
VPS35-206ENST00000565228 GOLGA6L7A0A1B0GV03 622 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 SLC12A8A0AV02 714 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 DDX3XO00571 662 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS35-206ENST00000565228 TRDMT1O14717 391 aaKnown RBP9.64□□□□□ -0.87
VPS35-206ENST00000565228 MED7O43513 233 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 CAVIN2O95810 425 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 CHRNB1P11230 501 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 AOC1P19801 751 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 AVPR2P30518 371 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 SLC6A4P31645 630 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 PON2Q15165 354 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 DHCR24Q15392 516 aa9.64□□□□□ -0.87
VPS35-206ENST00000565228 TRIP4Q15650 581 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms