RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 BCCIPQ9P287 314 aaKnown RBP eCLIP9.84□□□□□ -0.83
YBX3-218ENST00000546298 MAN1B1Q9UKM7 699 aa9.84□□□□□ -0.83
YBX3-218ENST00000546298 MED19A0JLT2 244 aaPredicted RBP9.83□□□□□ -0.84
YBX3-218ENST00000546298 DCDC2BA2VCK2 349 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 TRIM49BA6NDI0 452 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 NEDD8-MDP1E9PL57 170 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 SGK1O00141 431 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 XPO1O14980 1071 aaKnown RBP9.83□□□□□ -0.84
YBX3-218ENST00000546298 MAP3K13O43283 966 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 CACNG3O60359 315 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 FGFR1OPO95684 399 aaKnown RBP9.83□□□□□ -0.84
YBX3-218ENST00000546298 GNA14O95837 355 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 ZBED1O96006 694 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 PAEPP09466 180 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 TYRP14679 529 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 FMO5P49326 533 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 TKTL1P51854 596 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 LIMK1P53667 647 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 YWHAGP61981 247 aaKnown RBP eCLIP9.83□□□□□ -0.84
YBX3-218ENST00000546298 CREB5Q02930 508 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 BST2Q10589 180 aaKnown RBP9.83□□□□□ -0.84
YBX3-218ENST00000546298 EFEMP1Q12805 493 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 LRMPQ12912 555 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 E2F5Q15329 346 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 GOLGA7BQ2TAP0 167 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 RAB41Q5JT25 222 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 ISM2Q6H9L7 571 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 KLHL10Q6JEL2 608 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 TMEM92Q6UXU6 159 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 TPGS1Q6ZTW0 290 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 PGBD3Q8N328 593 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 TERB1Q8NA31 727 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 NELFBQ8WX92 580 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 IPO9Q96P70 1041 aaKnown RBP9.83□□□□□ -0.84
YBX3-218ENST00000546298 TPSD1Q9BZJ3 242 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 OLA1Q9NTK5 396 aaKnown RBP9.83□□□□□ -0.84
YBX3-218ENST00000546298 MARCH2Q9P0N8 246 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 RASAL2Q9UJF2 1139 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 NUDT5Q9UKK9 219 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 CIZ1Q9ULV3 898 aaPredicted RBP9.83□□□□□ -0.84
YBX3-218ENST00000546298 STARD13Q9Y3M8 1113 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 PATJQ8NI35 1801 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 FANCMQ8IYD8 2048 aa9.83□□□□□ -0.84
YBX3-218ENST00000546298 TCRBV21S2A2A0A5A6 115 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 SLC12A8A0AV02 714 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 BCLAF3A2AJT9 711 aaKnown RBP9.82□□□□□ -0.84
YBX3-218ENST00000546298 DCLK1O15075 740 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 MDM4O15151 490 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 STC2O76061 302 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 CAVIN2O95810 425 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 CYBBP04839 570 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 SETSIPP0DME0 302 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 NTSR1P30989 418 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 DPP6P42658 865 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 DGKGP49619 791 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 PDE4CQ08493 712 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 MESP2Q0VG99 397 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 SF3A2Q15428 464 aaKnown RBP9.82□□□□□ -0.84
YBX3-218ENST00000546298 STILQ15468 1287 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 PLA2G2CQ5R387 149 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 PMS2CLQ68D20 193 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 PM20D1Q6GTS8 502 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 TTI2Q6NXR4 508 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 TMEM270Q6UE05 265 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 Q6ZNB5 142 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 LPCAT2Q7L5N7 544 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 SIX6OS1Q8N1H7 587 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 MDGA1Q8NFP4 955 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 OLIG1Q8TAK6 271 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 RNF139Q8WU17 664 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 UCMAQ8WVF2 138 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 HMGB4Q8WW32 186 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 TSPAN16Q9UKR8 245 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 INVSQ9Y283 1065 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 PCDHB4Q9Y5E5 795 aa9.82□□□□□ -0.84
YBX3-218ENST00000546298 PPP1R3GB7ZBB8 358 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 O00370 1275 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 GFRA2O00451 464 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 NPC1O15118 1278 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 GDF9O60383 454 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 ADAM23O75077 832 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 CISD3P0C7P0 127 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 CHRM1P11229 460 aaPredicted RBP9.81□□□□□ -0.84
YBX3-218ENST00000546298 HOXB2P14652 356 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 HNRNPLP14866 589 aaKnown RBP eCLIP9.81□□□□□ -0.84
YBX3-218ENST00000546298 CD44P16070 742 aaKnown RBP9.81□□□□□ -0.84
YBX3-218ENST00000546298 CORO1AP31146 461 aaKnown RBP9.81□□□□□ -0.84
YBX3-218ENST00000546298 P2RY2P41231 377 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 DHPSP49366 369 aaPredicted RBP9.81□□□□□ -0.84
YBX3-218ENST00000546298 HARS2P49590 506 aaKnown RBP9.81□□□□□ -0.84
YBX3-218ENST00000546298 ZNF445P59923 1031 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 PAK1Q13153 545 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 MORC3Q14149 939 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 CNGA2Q16280 664 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 SPDYCQ5MJ68 293 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 LCLAT1Q6UWP7 414 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 CYP2U1Q7Z449 544 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 SFTPA1Q8IWL2 248 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 CHPFQ8IZ52 775 aa9.81□□□□□ -0.84
YBX3-218ENST00000546298 SCML4Q8N228 414 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 169.2 ms