RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 PLEKHA7Q6IQ23 1121 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 PTCRAQ6ISU1 281 aaPredicted RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 DCUN1D2Q6PH85 259 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 BEND5Q7L4P6 421 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 NPAS3Q8IXF0 933 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 KHSRPQ92945 711 aaKnown RBP eCLIP12.13□□□□□ -0.472e-7■■□□□ 13.3
YBX3-213ENST00000542641 ZNF830Q96NB3 372 aaPredicted RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 MRPL47Q9HD33 250 aaKnown RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 OLA1Q9NTK5 396 aaKnown RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.13□□□□□ -0.47
YBX3-213ENST00000542641 GDE1Q9NZC3 331 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 ZMYM5Q9UJ78 669 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 TMEM59LQ9UK28 342 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 NUDT5Q9UKK9 219 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 CDH7Q9ULB5 785 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 INTUQ9ULD6 942 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 NAALADL1Q9UQQ1 740 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 FAM50BQ9Y247 325 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 SCINQ9Y6U3 715 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 SPTBN5Q9NRC6 3674 aaKnown RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 GREB1Q4ZG55 1949 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 TCRBV5S1A1TA0A578 114 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 COCHO43405 550 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 DAB1O75553 588 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 OAS1P00973 400 aaKnown RBP12.12□□□□□ -0.47
YBX3-213ENST00000542641 CYP1A2P05177 515 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 CKMP06732 381 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 TMEM253P0C7T8 217 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 PFKLP17858 780 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 NOS2P35228 1153 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 RFC1P35251 1148 aaPredicted RBP12.12□□□□□ -0.47
YBX3-213ENST00000542641 AVPR1AP37288 418 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 MATKP42679 507 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 EFEMP1Q12805 493 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 SMAD2Q15796 467 aaKnown RBP12.12□□□□□ -0.47
YBX3-213ENST00000542641 AAK1Q2M2I8 961 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 SYPL2Q5VXT5 272 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 ARCQ7LC44 396 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 OTOP3Q7RTS5 596 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 CMTM8Q8IZV2 173 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 DEFB106AQ8N104 65 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 ZNF276Q8N554 614 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 EMC1Q8N766 993 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 ARL14EPQ8N8R7 260 aaPredicted RBP12.12□□□□□ -0.47
YBX3-213ENST00000542641 ACRBPQ8NEB7 543 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 ARHGEF26Q96DR7 871 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 ZSWIM3Q96MP5 696 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 MCEEQ96PE7 176 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 SLC2A13Q96QE2 648 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 SLC22A12Q96S37 553 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 DESI2Q9BSY9 194 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 RNF38Q9H0F5 515 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 CTTNBP2NLQ9P2B4 639 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 THEGQ9P2T0 379 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 DNMT3LQ9UJW3 386 aa12.12□□□□□ -0.47
YBX3-213ENST00000542641 REXO2Q9Y3B8 237 aaKnown RBP12.12□□□□□ -0.47
YBX3-213ENST00000542641 MDM4O15151 490 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 MBL2P11226 248 aaPredicted RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 PDGFRAP16234 1089 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 SP100P23497 879 aaPredicted RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 FLT3P36888 993 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 RPL7AP62424 266 aaKnown RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 PPP1R15BQ5SWA1 713 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 KLHDC10Q6PID8 442 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 KIAA1328Q86T90 577 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 MIB1Q86YT6 1006 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 TXLNBQ8N3L3 684 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 JOSD2Q8TAC2 188 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 ZSCAN18Q8TBC5 510 aaPredicted RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 RXFP2Q8WXD0 754 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 ACSF2Q96CM8 615 aaPredicted RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 MYADMQ96S97 322 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 DDX23Q9BUQ8 820 aaKnown RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 NUP85Q9BW27 656 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 PHF7Q9BWX1 381 aaPredicted RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 KCNF1Q9H3M0 494 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 RRN3Q9NYV6 651 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 MARCH2Q9P0N8 246 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 RASAL2Q9UJF2 1139 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 STAP1Q9ULZ2 295 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 TFR2Q9UP52 801 aa12.11□□□□□ -0.47
YBX3-213ENST00000542641 ZFP37Q9Y6Q3 630 aaPredicted RBP12.11□□□□□ -0.47
YBX3-213ENST00000542641 TMEM191CA6NGB0 347 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 C2CD4BA6NLJ0 364 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 OLFM2O95897 454 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 LAMP2P13473 410 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 GPD1P21695 349 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 SDC4P31431 198 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 GBP1P32455 592 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 VAV2P52735 878 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 SLC7A9P82251 487 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 SLC25A52Q3SY17 297 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 FAM78AQ5JUQ0 283 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 TRNP1Q6NT89 227 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 MSANTD2Q6P1R3 559 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 ARID3BQ8IVW6 561 aaPredicted RBP12.1□□□□□ -0.47
YBX3-213ENST00000542641 TTC16Q8NEE8 873 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 SLC35G2Q8TBE7 412 aa12.1□□□□□ -0.47
YBX3-213ENST00000542641 ADAM32Q8TC27 787 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms